miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9693 3' -53 NC_002577.1 + 129374 1.09 0.004219
Target:  5'- gACAGCCUACAAGCAAGCCACUAGGACu -3'
miRNA:   3'- -UGUCGGAUGUUCGUUCGGUGAUCCUG- -5'
9693 3' -53 NC_002577.1 + 4239 1.09 0.004219
Target:  5'- gACAGCCUACAAGCAAGCCACUAGGACu -3'
miRNA:   3'- -UGUCGGAUGUUCGUUCGGUGAUCCUG- -5'
9693 3' -53 NC_002577.1 + 81701 0.73 0.702834
Target:  5'- aGCcGCCUACGGGCGauAGCCGCgcGGuCa -3'
miRNA:   3'- -UGuCGGAUGUUCGU--UCGGUGauCCuG- -5'
9693 3' -53 NC_002577.1 + 161703 0.72 0.713212
Target:  5'- gGCGGCCU-CuGGCGcccGGCCACaAGGGCc -3'
miRNA:   3'- -UGUCGGAuGuUCGU---UCGGUGaUCCUG- -5'
9693 3' -53 NC_002577.1 + 135635 0.72 0.713212
Target:  5'- gGCGGCCU-CuGGCGcccGGCCACaAGGGCc -3'
miRNA:   3'- -UGUCGGAuGuUCGU---UCGGUGaUCCUG- -5'
9693 3' -53 NC_002577.1 + 60225 0.69 0.862272
Target:  5'- gGCGGCCUcggGCgGGGCGAcGCCAUaaaacgGGGACa -3'
miRNA:   3'- -UGUCGGA---UG-UUCGUU-CGGUGa-----UCCUG- -5'
9693 3' -53 NC_002577.1 + 82112 0.69 0.868507
Target:  5'- -gGGCCUGCGcGCcacuacgcgccGCUACUAGGGCa -3'
miRNA:   3'- ugUCGGAUGUuCGuu---------CGGUGAUCCUG- -5'
9693 3' -53 NC_002577.1 + 14464 0.68 0.905342
Target:  5'- aACAGUUguCAAGauCGGGCCugUGGGACu -3'
miRNA:   3'- -UGUCGGauGUUC--GUUCGGugAUCCUG- -5'
9693 3' -53 NC_002577.1 + 141108 0.68 0.905342
Target:  5'- gGCuGCCcGCGAcGgGAGCCGCgcGGGCa -3'
miRNA:   3'- -UGuCGGaUGUU-CgUUCGGUGauCCUG- -5'
9693 3' -53 NC_002577.1 + 156230 0.68 0.905342
Target:  5'- gGCuGCCcGCGAcGgGAGCCGCgcGGGCa -3'
miRNA:   3'- -UGuCGGaUGUU-CgUUCGGUGauCCUG- -5'
9693 3' -53 NC_002577.1 + 134057 0.68 0.911039
Target:  5'- gGCGGCCUaGCGAGCGcccgcgcGGCCGgc-GGGCa -3'
miRNA:   3'- -UGUCGGA-UGUUCGU-------UCGGUgauCCUG- -5'
9693 3' -53 NC_002577.1 + 163271 0.68 0.911039
Target:  5'- gGCGGCCUaGCGAGCGcccgcgcGGCCGgc-GGGCa -3'
miRNA:   3'- -UGUCGGA-UGUUCGU-------UCGGUgauCCUG- -5'
9693 3' -53 NC_002577.1 + 116994 0.68 0.911659
Target:  5'- uGCGGUCUACAAuGCAuGGUCAUgcuagacGGGACa -3'
miRNA:   3'- -UGUCGGAUGUU-CGU-UCGGUGa------UCCUG- -5'
9693 3' -53 NC_002577.1 + 82169 0.68 0.911659
Target:  5'- gGCAGCCguuCAAGCGGGCgGgU-GGAUu -3'
miRNA:   3'- -UGUCGGau-GUUCGUUCGgUgAuCCUG- -5'
9693 3' -53 NC_002577.1 + 160581 0.68 0.917721
Target:  5'- uGCAGCUggcgACAGGCGGagguccggcGCCugUccGGGACc -3'
miRNA:   3'- -UGUCGGa---UGUUCGUU---------CGGugA--UCCUG- -5'
9693 3' -53 NC_002577.1 + 78878 0.68 0.917721
Target:  5'- cAUGGCCUugAGGCuggguuucguucAAGCCGCggcGGAUa -3'
miRNA:   3'- -UGUCGGAugUUCG------------UUCGGUGau-CCUG- -5'
9693 3' -53 NC_002577.1 + 136756 0.68 0.917721
Target:  5'- uGCAGCUggcgACAGGCGGagguccggcGCCugUccGGGACc -3'
miRNA:   3'- -UGUCGGa---UGUUCGUU---------CGGugA--UCCUG- -5'
9693 3' -53 NC_002577.1 + 54506 0.68 0.923526
Target:  5'- uGCAGCaaaGCAuGGCGAGCUuugcCUGGGAUg -3'
miRNA:   3'- -UGUCGga-UGU-UCGUUCGGu---GAUCCUG- -5'
9693 3' -53 NC_002577.1 + 81149 0.67 0.934365
Target:  5'- -uGGCCUGCGGGUAgaucGGCCAUUauucccguagaGGGAg -3'
miRNA:   3'- ugUCGGAUGUUCGU----UCGGUGA-----------UCCUg -5'
9693 3' -53 NC_002577.1 + 55565 0.67 0.934365
Target:  5'- cGCuGCCgcc--GCAGcGCUACUGGGACg -3'
miRNA:   3'- -UGuCGGauguuCGUU-CGGUGAUCCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.