Results 1 - 20 of 35 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9693 | 3' | -53 | NC_002577.1 | + | 163271 | 0.68 | 0.911039 |
Target: 5'- gGCGGCCUaGCGAGCGcccgcgcGGCCGgc-GGGCa -3' miRNA: 3'- -UGUCGGA-UGUUCGU-------UCGGUgauCCUG- -5' |
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9693 | 3' | -53 | NC_002577.1 | + | 162280 | 0.67 | 0.944176 |
Target: 5'- aACAGCCggaacGCAAcCGAGCCGC-GGGGu -3' miRNA: 3'- -UGUCGGa----UGUUcGUUCGGUGaUCCUg -5' |
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9693 | 3' | -53 | NC_002577.1 | + | 161703 | 0.72 | 0.713212 |
Target: 5'- gGCGGCCU-CuGGCGcccGGCCACaAGGGCc -3' miRNA: 3'- -UGUCGGAuGuUCGU---UCGGUGaUCCUG- -5' |
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9693 | 3' | -53 | NC_002577.1 | + | 160581 | 0.68 | 0.917721 |
Target: 5'- uGCAGCUggcgACAGGCGGagguccggcGCCugUccGGGACc -3' miRNA: 3'- -UGUCGGa---UGUUCGUU---------CGGugA--UCCUG- -5' |
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9693 | 3' | -53 | NC_002577.1 | + | 156557 | 0.67 | 0.939398 |
Target: 5'- aGCGGCgUGCAGGCGccggugGGCuUAC-AGGGCg -3' miRNA: 3'- -UGUCGgAUGUUCGU------UCG-GUGaUCCUG- -5' |
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9693 | 3' | -53 | NC_002577.1 | + | 156230 | 0.68 | 0.905342 |
Target: 5'- gGCuGCCcGCGAcGgGAGCCGCgcGGGCa -3' miRNA: 3'- -UGuCGGaUGUU-CgUUCGGUGauCCUG- -5' |
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9693 | 3' | -53 | NC_002577.1 | + | 141108 | 0.68 | 0.905342 |
Target: 5'- gGCuGCCcGCGAcGgGAGCCGCgcGGGCa -3' miRNA: 3'- -UGuCGGaUGUU-CgUUCGGUGauCCUG- -5' |
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9693 | 3' | -53 | NC_002577.1 | + | 140780 | 0.67 | 0.939398 |
Target: 5'- aGCGGCgUGCAGGCGccggugGGCuUAC-AGGGCg -3' miRNA: 3'- -UGUCGgAUGUUCGU------UCG-GUGaUCCUG- -5' |
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9693 | 3' | -53 | NC_002577.1 | + | 136756 | 0.68 | 0.917721 |
Target: 5'- uGCAGCUggcgACAGGCGGagguccggcGCCugUccGGGACc -3' miRNA: 3'- -UGUCGGa---UGUUCGUU---------CGGugA--UCCUG- -5' |
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9693 | 3' | -53 | NC_002577.1 | + | 135635 | 0.72 | 0.713212 |
Target: 5'- gGCGGCCU-CuGGCGcccGGCCACaAGGGCc -3' miRNA: 3'- -UGUCGGAuGuUCGU---UCGGUGaUCCUG- -5' |
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9693 | 3' | -53 | NC_002577.1 | + | 134057 | 0.68 | 0.911039 |
Target: 5'- gGCGGCCUaGCGAGCGcccgcgcGGCCGgc-GGGCa -3' miRNA: 3'- -UGUCGGA-UGUUCGU-------UCGGUgauCCUG- -5' |
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9693 | 3' | -53 | NC_002577.1 | + | 133395 | 0.66 | 0.967658 |
Target: 5'- gGCAGCCcGCGGGCuGAGugcaCCugUGGcGGCg -3' miRNA: 3'- -UGUCGGaUGUUCG-UUC----GGugAUC-CUG- -5' |
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9693 | 3' | -53 | NC_002577.1 | + | 129976 | 0.66 | 0.963996 |
Target: 5'- gGCGGaCUGCAGGCGaagaaguAGCCgggcgcgaagcgGCUGGGAa -3' miRNA: 3'- -UGUCgGAUGUUCGU-------UCGG------------UGAUCCUg -5' |
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9693 | 3' | -53 | NC_002577.1 | + | 129374 | 1.09 | 0.004219 |
Target: 5'- gACAGCCUACAAGCAAGCCACUAGGACu -3' miRNA: 3'- -UGUCGGAUGUUCGUUCGGUGAUCCUG- -5' |
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9693 | 3' | -53 | NC_002577.1 | + | 122547 | 0.66 | 0.967658 |
Target: 5'- cUAGCCccCGGcGCGGGCCGCggccGGACa -3' miRNA: 3'- uGUCGGauGUU-CGUUCGGUGau--CCUG- -5' |
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9693 | 3' | -53 | NC_002577.1 | + | 122425 | 0.66 | 0.96434 |
Target: 5'- cCGGCCUACAAauacGCGAGCgGagguccggcgGGGACc -3' miRNA: 3'- uGUCGGAUGUU----CGUUCGgUga--------UCCUG- -5' |
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9693 | 3' | -53 | NC_002577.1 | + | 118669 | 0.66 | 0.952976 |
Target: 5'- uACAGCUUACuAGCGcaaGGCUg--AGGACa -3' miRNA: 3'- -UGUCGGAUGuUCGU---UCGGugaUCCUG- -5' |
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9693 | 3' | -53 | NC_002577.1 | + | 116994 | 0.68 | 0.911659 |
Target: 5'- uGCGGUCUACAAuGCAuGGUCAUgcuagacGGGACa -3' miRNA: 3'- -UGUCGGAUGUU-CGU-UCGGUGa------UCCUG- -5' |
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9693 | 3' | -53 | NC_002577.1 | + | 85545 | 0.67 | 0.944176 |
Target: 5'- cCAGCgaauuCUGCAGGCGAGCCAaucuGGCa -3' miRNA: 3'- uGUCG-----GAUGUUCGUUCGGUgaucCUG- -5' |
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9693 | 3' | -53 | NC_002577.1 | + | 82169 | 0.68 | 0.911659 |
Target: 5'- gGCAGCCguuCAAGCGGGCgGgU-GGAUu -3' miRNA: 3'- -UGUCGGau-GUUCGUUCGgUgAuCCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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