Results 21 - 40 of 82 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
9699 | 3' | -46.8 | NC_002577.1 | + | 124092 | 0.67 | 0.999432 |
Target: 5'- gGgGggGGGAGGGAGGGAaauaGCcgGCCGAAc -3' miRNA: 3'- -CgCuaCCUUCCCUUUUUg---UG--UGGUUU- -5' |
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9699 | 3' | -46.8 | NC_002577.1 | + | 8495 | 0.67 | 0.999432 |
Target: 5'- gGCGggGGggGGGGggggguguguGAGugACACgAAc -3' miRNA: 3'- -CGCuaCCuuCCCU----------UUUugUGUGgUUu -5' |
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9699 | 3' | -46.8 | NC_002577.1 | + | 7320 | 0.67 | 0.999547 |
Target: 5'- gGgGggGGggGGGAGaugcGAACGC-CCAc- -3' miRNA: 3'- -CgCuaCCuuCCCUU----UUUGUGuGGUuu -5' |
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9699 | 3' | -46.8 | NC_002577.1 | + | 5399 | 0.67 | 0.999547 |
Target: 5'- uGUGA-GGAAGGGGu-AACgACGCCGu- -3' miRNA: 3'- -CGCUaCCUUCCCUuuUUG-UGUGGUuu -5' |
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9699 | 3' | -46.8 | NC_002577.1 | + | 156017 | 0.67 | 0.999641 |
Target: 5'- aGCaAUGG--GGGAAAcGCGCGCCGGu -3' miRNA: 3'- -CGcUACCuuCCCUUUuUGUGUGGUUu -5' |
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9699 | 3' | -46.8 | NC_002577.1 | + | 7578 | 0.67 | 0.999641 |
Target: 5'- uGCGggGGggGGGggGGGgGgGauCCGAAc -3' miRNA: 3'- -CGCuaCCuuCCCuuUUUgUgU--GGUUU- -5' |
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9699 | 3' | -46.8 | NC_002577.1 | + | 124520 | 0.67 | 0.99978 |
Target: 5'- uGCGA-GGggGGGGGcGACggGCgACCGGGa -3' miRNA: 3'- -CGCUaCCuuCCCUUuUUG--UG-UGGUUU- -5' |
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9699 | 3' | -46.8 | NC_002577.1 | + | 126036 | 0.67 | 0.999641 |
Target: 5'- uGCGggGGggGGGggGGGgGgGauCCGAAc -3' miRNA: 3'- -CGCuaCCuuCCCuuUUUgUgU--GGUUU- -5' |
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9699 | 3' | -46.8 | NC_002577.1 | + | 9094 | 0.67 | 0.99978 |
Target: 5'- uGCGA-GGggGGGGGcGACggGCgACCGGGa -3' miRNA: 3'- -CGCUaCCuuCCCUUuUUG--UG-UGGUUU- -5' |
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9699 | 3' | -46.8 | NC_002577.1 | + | 159144 | 0.68 | 0.999124 |
Target: 5'- -gGcgGGGAGGGAAuuuGC-CACCAc- -3' miRNA: 3'- cgCuaCCUUCCCUUuu-UGuGUGGUuu -5' |
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9699 | 3' | -46.8 | NC_002577.1 | + | 139647 | 0.68 | 0.999292 |
Target: 5'- gGCGG-GGAGGGGGAGcGgGCACUc-- -3' miRNA: 3'- -CGCUaCCUUCCCUUUuUgUGUGGuuu -5' |
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9699 | 3' | -46.8 | NC_002577.1 | + | 138194 | 0.68 | 0.999124 |
Target: 5'- -gGcgGGGAGGGAAuuuGC-CACCAc- -3' miRNA: 3'- cgCuaCCUUCCCUUuu-UGuGUGGUuu -5' |
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9699 | 3' | -46.8 | NC_002577.1 | + | 154232 | 0.68 | 0.999124 |
Target: 5'- aGgGAUGaGggGGGAGuuGCcugcCGCCGAAc -3' miRNA: 3'- -CgCUAC-CuuCCCUUuuUGu---GUGGUUU- -5' |
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9699 | 3' | -46.8 | NC_002577.1 | + | 151705 | 0.68 | 0.999352 |
Target: 5'- -aGAaggGGAGGGGcggguuuugacuuuuAAAAGCACACCGc- -3' miRNA: 3'- cgCUa--CCUUCCC---------------UUUUUGUGUGGUuu -5' |
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9699 | 3' | -46.8 | NC_002577.1 | + | 126963 | 0.68 | 0.999124 |
Target: 5'- cGUGggGGggGGGGGAGGCcugaACgGCCGGc -3' miRNA: 3'- -CGCuaCCuuCCCUUUUUG----UG-UGGUUu -5' |
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9699 | 3' | -46.8 | NC_002577.1 | + | 6303 | 0.68 | 0.999292 |
Target: 5'- -gGggGGAGGGGGAAGGCugAaCGGAg -3' miRNA: 3'- cgCuaCCUUCCCUUUUUGugUgGUUU- -5' |
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9699 | 3' | -46.8 | NC_002577.1 | + | 153945 | 0.68 | 0.999292 |
Target: 5'- aGUGG-GGggGGGGAAGAUACAaUCGu- -3' miRNA: 3'- -CGCUaCCuuCCCUUUUUGUGU-GGUuu -5' |
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9699 | 3' | -46.8 | NC_002577.1 | + | 157691 | 0.68 | 0.999292 |
Target: 5'- gGCGG-GGAGGGGGAGcGgGCACUc-- -3' miRNA: 3'- -CGCUaCCUUCCCUUUuUgUGUGGuuu -5' |
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9699 | 3' | -46.8 | NC_002577.1 | + | 97722 | 0.68 | 0.999124 |
Target: 5'- cGUGcUGGgcGGGAGAcGCGCgcgACCGAGg -3' miRNA: 3'- -CGCuACCuuCCCUUUuUGUG---UGGUUU- -5' |
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9699 | 3' | -46.8 | NC_002577.1 | + | 142480 | 0.68 | 0.998683 |
Target: 5'- gGgGggGGggGGGggGGGCGCGggUCGGGg -3' miRNA: 3'- -CgCuaCCuuCCCuuUUUGUGU--GGUUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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