miRNA display CGI


Results 1 - 20 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9699 3' -46.8 NC_002577.1 + 6635 1.09 0.022592
Target:  5'- uGCGAUGGAAGGGAAAAACACACCAAAc -3'
miRNA:   3'- -CGCUACCUUCCCUUUUUGUGUGGUUU- -5'
9699 3' -46.8 NC_002577.1 + 126979 1.09 0.022592
Target:  5'- uGCGAUGGAAGGGAAAAACACACCAAAc -3'
miRNA:   3'- -CGCUACCUUCCCUUUUUGUGUGGUUU- -5'
9699 3' -46.8 NC_002577.1 + 6864 0.94 0.159625
Target:  5'- uGCGAUGGAAGGGAAAGGCAaACCGGAa -3'
miRNA:   3'- -CGCUACCUUCCCUUUUUGUgUGGUUU- -5'
9699 3' -46.8 NC_002577.1 + 126749 0.94 0.159625
Target:  5'- uGCGAUGGAAGGGAAAGGCAaACCGGAa -3'
miRNA:   3'- -CGCUACCUUCCCUUUUUGUgUGGUUU- -5'
9699 3' -46.8 NC_002577.1 + 11606 0.79 0.774931
Target:  5'- cGCGAUGcGGcGGGGGAAAAgGCGCCGAu -3'
miRNA:   3'- -CGCUAC-CU-UCCCUUUUUgUGUGGUUu -5'
9699 3' -46.8 NC_002577.1 + 122008 0.79 0.774931
Target:  5'- cGCGAUGcGGcGGGGGAAAAgGCGCCGAu -3'
miRNA:   3'- -CGCUAC-CU-UCCCUUUUUgUGUGGUUu -5'
9699 3' -46.8 NC_002577.1 + 41103 0.75 0.922081
Target:  5'- gGCcGUGGAAGGGAAuAGCA-ACCAAGa -3'
miRNA:   3'- -CGcUACCUUCCCUUuUUGUgUGGUUU- -5'
9699 3' -46.8 NC_002577.1 + 162971 0.73 0.96451
Target:  5'- gGgGggGGggGGGggGGGCGCGacuCCAAGc -3'
miRNA:   3'- -CgCuaCCuuCCCuuUUUGUGU---GGUUU- -5'
9699 3' -46.8 NC_002577.1 + 121996 0.73 0.974041
Target:  5'- uGUGGgggaagGGAAGGGGGAGACG-GCCGAAa -3'
miRNA:   3'- -CGCUa-----CCUUCCCUUUUUGUgUGGUUU- -5'
9699 3' -46.8 NC_002577.1 + 11617 0.73 0.974041
Target:  5'- uGUGGgggaagGGAAGGGGGAGACG-GCCGAAa -3'
miRNA:   3'- -CGCUa-----CCUUCCCUUUUUGUgUGGUUU- -5'
9699 3' -46.8 NC_002577.1 + 161812 0.72 0.976759
Target:  5'- uGUGGcUGGAAGGGGAcgGCGgucCGCCGGAg -3'
miRNA:   3'- -CGCU-ACCUUCCCUUuuUGU---GUGGUUU- -5'
9699 3' -46.8 NC_002577.1 + 135525 0.72 0.976759
Target:  5'- uGUGGcUGGAAGGGGAcgGCGgucCGCCGGAg -3'
miRNA:   3'- -CGCU-ACCUUCCCUUuuUGU---GUGGUUU- -5'
9699 3' -46.8 NC_002577.1 + 115027 0.72 0.979262
Target:  5'- uCGAUGGggGGGuuuGAAUugGCUGAu -3'
miRNA:   3'- cGCUACCuuCCCuu-UUUGugUGGUUu -5'
9699 3' -46.8 NC_002577.1 + 9012 0.72 0.981339
Target:  5'- cGCGAaGGGuuaguugGGGGAGGGGCACGCgCAu- -3'
miRNA:   3'- -CGCUaCCU-------UCCCUUUUUGUGUG-GUuu -5'
9699 3' -46.8 NC_002577.1 + 124602 0.72 0.981339
Target:  5'- cGCGAaGGGuuaguugGGGGAGGGGCACGCgCAu- -3'
miRNA:   3'- -CGCUaCCU-------UCCCUUUUUGUGUG-GUuu -5'
9699 3' -46.8 NC_002577.1 + 83353 0.72 0.98156
Target:  5'- aGCGggGGAAGGGGAcGAguCGCUAc- -3'
miRNA:   3'- -CGCuaCCUUCCCUUuUUguGUGGUuu -5'
9699 3' -46.8 NC_002577.1 + 119524 0.72 0.98156
Target:  5'- uGUGAUGGAGauGAGGAAUACGCUAAAa -3'
miRNA:   3'- -CGCUACCUUccCUUUUUGUGUGGUUU- -5'
9699 3' -46.8 NC_002577.1 + 140721 0.71 0.987314
Target:  5'- cGgGggGGGGuGGGggGGGCACGCCcGAg -3'
miRNA:   3'- -CgCuaCCUU-CCCuuUUUGUGUGGuUU- -5'
9699 3' -46.8 NC_002577.1 + 156616 0.71 0.987314
Target:  5'- cGgGggGGGGuGGGggGGGCACGCCcGAg -3'
miRNA:   3'- -CgCuaCCUU-CCCuuUUUGUGUGGuUU- -5'
9699 3' -46.8 NC_002577.1 + 10123 0.71 0.990303
Target:  5'- uCGGUGGAGGGGuguGGGAaACGCCGc- -3'
miRNA:   3'- cGCUACCUUCCCu--UUUUgUGUGGUuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.