miRNA display CGI


Results 21 - 40 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9699 3' -46.8 NC_002577.1 + 156017 0.67 0.999641
Target:  5'- aGCaAUGG--GGGAAAcGCGCGCCGGu -3'
miRNA:   3'- -CGcUACCuuCCCUUUuUGUGUGGUUu -5'
9699 3' -46.8 NC_002577.1 + 126294 0.67 0.999547
Target:  5'- gGgGggGGggGGGAGaugcGAACGC-CCAc- -3'
miRNA:   3'- -CgCuaCCuuCCCUU----UUUGUGuGGUuu -5'
9699 3' -46.8 NC_002577.1 + 128215 0.67 0.999547
Target:  5'- uGUGA-GGAAGGGGu-AACgACGCCGu- -3'
miRNA:   3'- -CGCUaCCUUCCCUuuUUG-UGUGGUuu -5'
9699 3' -46.8 NC_002577.1 + 5399 0.67 0.999547
Target:  5'- uGUGA-GGAAGGGGu-AACgACGCCGu- -3'
miRNA:   3'- -CGCUaCCUUCCCUuuUUG-UGUGGUuu -5'
9699 3' -46.8 NC_002577.1 + 7320 0.67 0.999547
Target:  5'- gGgGggGGggGGGAGaugcGAACGC-CCAc- -3'
miRNA:   3'- -CgCuaCCuuCCCUU----UUUGUGuGGUuu -5'
9699 3' -46.8 NC_002577.1 + 8495 0.67 0.999432
Target:  5'- gGCGggGGggGGGGggggguguguGAGugACACgAAc -3'
miRNA:   3'- -CGCuaCCuuCCCU----------UUUugUGUGgUUu -5'
9699 3' -46.8 NC_002577.1 + 9522 0.67 0.999432
Target:  5'- gGgGggGGGAGGGAGGGAaauaGCcgGCCGAAc -3'
miRNA:   3'- -CgCuaCCUUCCCUUUUUg---UG--UGGUUU- -5'
9699 3' -46.8 NC_002577.1 + 125119 0.67 0.999432
Target:  5'- gGCGggGGggGGGGggggguguguGAGugACACgAAc -3'
miRNA:   3'- -CGCuaCCuuCCCU----------UUUugUGUGgUUu -5'
9699 3' -46.8 NC_002577.1 + 124092 0.67 0.999432
Target:  5'- gGgGggGGGAGGGAGGGAaauaGCcgGCCGAAc -3'
miRNA:   3'- -CgCuaCCUUCCCUUUUUg---UG--UGGUUU- -5'
9699 3' -46.8 NC_002577.1 + 151705 0.68 0.999352
Target:  5'- -aGAaggGGAGGGGcggguuuugacuuuuAAAAGCACACCGc- -3'
miRNA:   3'- cgCUa--CCUUCCC---------------UUUUUGUGUGGUuu -5'
9699 3' -46.8 NC_002577.1 + 127311 0.68 0.999292
Target:  5'- -gGggGGAGGGGGAAGGCugAaCGGAg -3'
miRNA:   3'- cgCuaCCUUCCCUUUUUGugUgGUUU- -5'
9699 3' -46.8 NC_002577.1 + 139647 0.68 0.999292
Target:  5'- gGCGG-GGAGGGGGAGcGgGCACUc-- -3'
miRNA:   3'- -CGCUaCCUUCCCUUUuUgUGUGGuuu -5'
9699 3' -46.8 NC_002577.1 + 6264 0.68 0.999292
Target:  5'- -gGggGGAGGGGGAAGGCugAaCGGAg -3'
miRNA:   3'- cgCuaCCUUCCCUUUUUGugUgGUUU- -5'
9699 3' -46.8 NC_002577.1 + 6303 0.68 0.999292
Target:  5'- -gGggGGAGGGGGAAGGCugAaCGGAg -3'
miRNA:   3'- cgCuaCCUUCCCUUUUUGugUgGUUU- -5'
9699 3' -46.8 NC_002577.1 + 153945 0.68 0.999292
Target:  5'- aGUGG-GGggGGGGAAGAUACAaUCGu- -3'
miRNA:   3'- -CGCUaCCuuCCCUUUUUGUGU-GGUuu -5'
9699 3' -46.8 NC_002577.1 + 157691 0.68 0.999292
Target:  5'- gGCGG-GGAGGGGGAGcGgGCACUc-- -3'
miRNA:   3'- -CGCUaCCUUCCCUUUuUgUGUGGuuu -5'
9699 3' -46.8 NC_002577.1 + 127350 0.68 0.999292
Target:  5'- -gGggGGAGGGGGAAGGCugAaCGGAg -3'
miRNA:   3'- cgCuaCCUUCCCUUUUUGugUgGUUU- -5'
9699 3' -46.8 NC_002577.1 + 142374 0.68 0.999195
Target:  5'- cGUGggGGAGGGGggGccgGcccuacuugccccuaACGCACCGGc -3'
miRNA:   3'- -CGCuaCCUUCCCuuU---U---------------UGUGUGGUUu -5'
9699 3' -46.8 NC_002577.1 + 154963 0.68 0.999195
Target:  5'- cGUGggGGAGGGGggGccgGcccuacuugccccuaACGCACCGGc -3'
miRNA:   3'- -CGCuaCCUUCCCuuU---U---------------UGUGUGGUUu -5'
9699 3' -46.8 NC_002577.1 + 97722 0.68 0.999124
Target:  5'- cGUGcUGGgcGGGAGAcGCGCgcgACCGAGg -3'
miRNA:   3'- -CGCuACCuuCCCUUUuUGUG---UGGUUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.