miRNA display CGI


Results 41 - 60 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9699 3' -46.8 NC_002577.1 + 138194 0.68 0.999124
Target:  5'- -gGcgGGGAGGGAAuuuGC-CACCAc- -3'
miRNA:   3'- cgCuaCCUUCCCUUuu-UGuGUGGUuu -5'
9699 3' -46.8 NC_002577.1 + 6650 0.68 0.999124
Target:  5'- cGUGggGGggGGGGGAGGCcugaACgGCCGGc -3'
miRNA:   3'- -CGCuaCCuuCCCUUUUUG----UG-UGGUUu -5'
9699 3' -46.8 NC_002577.1 + 154232 0.68 0.999124
Target:  5'- aGgGAUGaGggGGGAGuuGCcugcCGCCGAAc -3'
miRNA:   3'- -CgCUAC-CuuCCCUUuuUGu---GUGGUUU- -5'
9699 3' -46.8 NC_002577.1 + 159144 0.68 0.999124
Target:  5'- -gGcgGGGAGGGAAuuuGC-CACCAc- -3'
miRNA:   3'- cgCuaCCUUCCCUUuu-UGuGUGGUuu -5'
9699 3' -46.8 NC_002577.1 + 97722 0.68 0.999124
Target:  5'- cGUGcUGGgcGGGAGAcGCGCgcgACCGAGg -3'
miRNA:   3'- -CGCuACCuuCCCUUUuUGUG---UGGUUU- -5'
9699 3' -46.8 NC_002577.1 + 25905 0.68 0.998923
Target:  5'- cGCGAUGGcAGGGAGAAuUACuuguCCc-- -3'
miRNA:   3'- -CGCUACCuUCCCUUUUuGUGu---GGuuu -5'
9699 3' -46.8 NC_002577.1 + 154858 0.68 0.998683
Target:  5'- gGgGggGGggGGGggGGGCGCGggUCGGGg -3'
miRNA:   3'- -CgCuaCCuuCCCuuUUUGUGU--GGUUU- -5'
9699 3' -46.8 NC_002577.1 + 142480 0.68 0.998683
Target:  5'- gGgGggGGggGGGggGGGCGCGggUCGGGg -3'
miRNA:   3'- -CgCuaCCuuCCCuuUUUGUGU--GGUUU- -5'
9699 3' -46.8 NC_002577.1 + 139029 0.68 0.998683
Target:  5'- cGCGGUGGcgggcGGGggGGGCAUuUCGAAa -3'
miRNA:   3'- -CGCUACCuu---CCCuuUUUGUGuGGUUU- -5'
9699 3' -46.8 NC_002577.1 + 7451 0.69 0.9984
Target:  5'- gGCcuUGGAAGGGGGAAAgACGCa--- -3'
miRNA:   3'- -CGcuACCUUCCCUUUUUgUGUGguuu -5'
9699 3' -46.8 NC_002577.1 + 126163 0.69 0.9984
Target:  5'- gGCcuUGGAAGGGGGAAAgACGCa--- -3'
miRNA:   3'- -CGcuACCUUCCCUUUUUgUGUGguuu -5'
9699 3' -46.8 NC_002577.1 + 158302 0.69 0.997676
Target:  5'- gGCGGgcgGGggGGGcauuuGAAAgGCACCu-- -3'
miRNA:   3'- -CGCUa--CCuuCCCu----UUUUgUGUGGuuu -5'
9699 3' -46.8 NC_002577.1 + 157005 0.7 0.995401
Target:  5'- ----cGGAGGGGAAGGACGCugaCAAGa -3'
miRNA:   3'- cgcuaCCUUCCCUUUUUGUGug-GUUU- -5'
9699 3' -46.8 NC_002577.1 + 140333 0.7 0.995401
Target:  5'- ----cGGAGGGGAAGGACGCugaCAAGa -3'
miRNA:   3'- cgcuaCCUUCCCUUUUUGUGug-GUUU- -5'
9699 3' -46.8 NC_002577.1 + 134356 0.7 0.993718
Target:  5'- gGgGggGGggGGGggGGGCGCGacUCAAGc -3'
miRNA:   3'- -CgCuaCCuuCCCuuUUUGUGU--GGUUU- -5'
9699 3' -46.8 NC_002577.1 + 95630 0.7 0.993718
Target:  5'- -gGAUGuGAGGGGGAAAGCuuAUAUCGAAg -3'
miRNA:   3'- cgCUAC-CUUCCCUUUUUG--UGUGGUUU- -5'
9699 3' -46.8 NC_002577.1 + 65775 0.7 0.992709
Target:  5'- aCGAUcGGAGGGAGAGACGaGCCGc- -3'
miRNA:   3'- cGCUAcCUUCCCUUUUUGUgUGGUuu -5'
9699 3' -46.8 NC_002577.1 + 10938 0.71 0.991573
Target:  5'- -gGGUGGAAGGGGGAuGgGUACCGAGg -3'
miRNA:   3'- cgCUACCUUCCCUUUuUgUGUGGUUU- -5'
9699 3' -46.8 NC_002577.1 + 122676 0.71 0.991573
Target:  5'- -gGGUGGAAGGGGGAuGgGUACCGAGg -3'
miRNA:   3'- cgCUACCUUCCCUUUuUgUGUGGUUU- -5'
9699 3' -46.8 NC_002577.1 + 142203 0.71 0.990303
Target:  5'- gGUGGUGGu-GGGAGAGAaAUACCGAc -3'
miRNA:   3'- -CGCUACCuuCCCUUUUUgUGUGGUUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.