miRNA display CGI


Results 1 - 20 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9699 3' -46.8 NC_002577.1 + 4251 0.66 0.9999
Target:  5'- gGgGGUGGggGGGAu--AUGCgACCGc- -3'
miRNA:   3'- -CgCUACCuuCCCUuuuUGUG-UGGUuu -5'
9699 3' -46.8 NC_002577.1 + 5399 0.67 0.999547
Target:  5'- uGUGA-GGAAGGGGu-AACgACGCCGu- -3'
miRNA:   3'- -CGCUaCCUUCCCUuuUUG-UGUGGUuu -5'
9699 3' -46.8 NC_002577.1 + 6264 0.68 0.999292
Target:  5'- -gGggGGAGGGGGAAGGCugAaCGGAg -3'
miRNA:   3'- cgCuaCCUUCCCUUUUUGugUgGUUU- -5'
9699 3' -46.8 NC_002577.1 + 6303 0.68 0.999292
Target:  5'- -gGggGGAGGGGGAAGGCugAaCGGAg -3'
miRNA:   3'- cgCuaCCUUCCCUUUUUGugUgGUUU- -5'
9699 3' -46.8 NC_002577.1 + 6574 0.66 0.999829
Target:  5'- uGCGcgGGGAGuGGGGcgGCGguCCAAu -3'
miRNA:   3'- -CGCuaCCUUC-CCUUuuUGUguGGUUu -5'
9699 3' -46.8 NC_002577.1 + 6635 1.09 0.022592
Target:  5'- uGCGAUGGAAGGGAAAAACACACCAAAc -3'
miRNA:   3'- -CGCUACCUUCCCUUUUUGUGUGGUUU- -5'
9699 3' -46.8 NC_002577.1 + 6650 0.68 0.999124
Target:  5'- cGUGggGGggGGGGGAGGCcugaACgGCCGGc -3'
miRNA:   3'- -CGCuaCCuuCCCUUUUUG----UG-UGGUUu -5'
9699 3' -46.8 NC_002577.1 + 6864 0.94 0.159625
Target:  5'- uGCGAUGGAAGGGAAAGGCAaACCGGAa -3'
miRNA:   3'- -CGCUACCUUCCCUUUUUGUgUGGUUU- -5'
9699 3' -46.8 NC_002577.1 + 7320 0.67 0.999547
Target:  5'- gGgGggGGggGGGAGaugcGAACGC-CCAc- -3'
miRNA:   3'- -CgCuaCCuuCCCUU----UUUGUGuGGUuu -5'
9699 3' -46.8 NC_002577.1 + 7451 0.69 0.9984
Target:  5'- gGCcuUGGAAGGGGGAAAgACGCa--- -3'
miRNA:   3'- -CGcuACCUUCCCUUUUUgUGUGguuu -5'
9699 3' -46.8 NC_002577.1 + 7578 0.67 0.999641
Target:  5'- uGCGggGGggGGGggGGGgGgGauCCGAAc -3'
miRNA:   3'- -CGCuaCCuuCCCuuUUUgUgU--GGUUU- -5'
9699 3' -46.8 NC_002577.1 + 8495 0.67 0.999432
Target:  5'- gGCGggGGggGGGGggggguguguGAGugACACgAAc -3'
miRNA:   3'- -CGCuaCCuuCCCU----------UUUugUGUGgUUu -5'
9699 3' -46.8 NC_002577.1 + 8946 0.66 0.999891
Target:  5'- uGCGggGGAuacaguuucgcgacGGGGAGGAGCcguuagcuCACCGGc -3'
miRNA:   3'- -CGCuaCCU--------------UCCCUUUUUGu-------GUGGUUu -5'
9699 3' -46.8 NC_002577.1 + 9012 0.72 0.981339
Target:  5'- cGCGAaGGGuuaguugGGGGAGGGGCACGCgCAu- -3'
miRNA:   3'- -CGCUaCCU-------UCCCUUUUUGUGUG-GUuu -5'
9699 3' -46.8 NC_002577.1 + 9094 0.67 0.99978
Target:  5'- uGCGA-GGggGGGGGcGACggGCgACCGGGa -3'
miRNA:   3'- -CGCUaCCuuCCCUUuUUG--UG-UGGUUU- -5'
9699 3' -46.8 NC_002577.1 + 9522 0.67 0.999432
Target:  5'- gGgGggGGGAGGGAGGGAaauaGCcgGCCGAAc -3'
miRNA:   3'- -CgCuaCCUUCCCUUUUUg---UG--UGGUUU- -5'
9699 3' -46.8 NC_002577.1 + 10123 0.71 0.990303
Target:  5'- uCGGUGGAGGGGuguGGGAaACGCCGc- -3'
miRNA:   3'- cGCUACCUUCCCu--UUUUgUGUGGUuu -5'
9699 3' -46.8 NC_002577.1 + 10938 0.71 0.991573
Target:  5'- -gGGUGGAAGGGGGAuGgGUACCGAGg -3'
miRNA:   3'- cgCUACCUUCCCUUUuUgUGUGGUUU- -5'
9699 3' -46.8 NC_002577.1 + 11606 0.79 0.774931
Target:  5'- cGCGAUGcGGcGGGGGAAAAgGCGCCGAu -3'
miRNA:   3'- -CGCUAC-CU-UCCCUUUUUgUGUGGUUu -5'
9699 3' -46.8 NC_002577.1 + 11617 0.73 0.974041
Target:  5'- uGUGGgggaagGGAAGGGGGAGACG-GCCGAAa -3'
miRNA:   3'- -CGCUa-----CCUUCCCUUUUUGUgUGGUUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.