miRNA display CGI


Results 21 - 40 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9699 3' -46.8 NC_002577.1 + 24167 0.66 0.9999
Target:  5'- --cGUGGAAGGGuuAAAgGCgGCCAAu -3'
miRNA:   3'- cgcUACCUUCCCuuUUUgUG-UGGUUu -5'
9699 3' -46.8 NC_002577.1 + 25905 0.68 0.998923
Target:  5'- cGCGAUGGcAGGGAGAAuUACuuguCCc-- -3'
miRNA:   3'- -CGCUACCuUCCCUUUUuGUGu---GGuuu -5'
9699 3' -46.8 NC_002577.1 + 30807 0.67 0.99978
Target:  5'- cGCGAUcGGAAGGagcccggaGAGGAGCAgAUCAu- -3'
miRNA:   3'- -CGCUA-CCUUCC--------CUUUUUGUgUGGUuu -5'
9699 3' -46.8 NC_002577.1 + 41103 0.75 0.922081
Target:  5'- gGCcGUGGAAGGGAAuAGCA-ACCAAGa -3'
miRNA:   3'- -CGcUACCUUCCCUUuUUGUgUGGUUU- -5'
9699 3' -46.8 NC_002577.1 + 43940 0.66 0.999829
Target:  5'- gGCGcccaaaaacuGUGGAAcGGGAGGAGCucuGCCGAGc -3'
miRNA:   3'- -CGC----------UACCUU-CCCUUUUUGug-UGGUUU- -5'
9699 3' -46.8 NC_002577.1 + 58028 0.67 0.99978
Target:  5'- ----gGGGAGGGAAGGGCcucgcuagguaGCGCCAc- -3'
miRNA:   3'- cgcuaCCUUCCCUUUUUG-----------UGUGGUuu -5'
9699 3' -46.8 NC_002577.1 + 65775 0.7 0.992709
Target:  5'- aCGAUcGGAGGGAGAGACGaGCCGc- -3'
miRNA:   3'- cGCUAcCUUCCCUUUUUGUgUGGUuu -5'
9699 3' -46.8 NC_002577.1 + 83353 0.72 0.98156
Target:  5'- aGCGggGGAAGGGGAcGAguCGCUAc- -3'
miRNA:   3'- -CGCuaCCUUCCCUUuUUguGUGGUuu -5'
9699 3' -46.8 NC_002577.1 + 95630 0.7 0.993718
Target:  5'- -gGAUGuGAGGGGGAAAGCuuAUAUCGAAg -3'
miRNA:   3'- cgCUAC-CUUCCCUUUUUG--UGUGGUUU- -5'
9699 3' -46.8 NC_002577.1 + 97722 0.68 0.999124
Target:  5'- cGUGcUGGgcGGGAGAcGCGCgcgACCGAGg -3'
miRNA:   3'- -CGCuACCuuCCCUUUuUGUG---UGGUUU- -5'
9699 3' -46.8 NC_002577.1 + 100584 0.66 0.999924
Target:  5'- cGCGAU---GGGGAGcAACGCuACCGAGc -3'
miRNA:   3'- -CGCUAccuUCCCUUuUUGUG-UGGUUU- -5'
9699 3' -46.8 NC_002577.1 + 115027 0.72 0.979262
Target:  5'- uCGAUGGggGGGuuuGAAUugGCUGAu -3'
miRNA:   3'- cGCUACCuuCCCuu-UUUGugUGGUUu -5'
9699 3' -46.8 NC_002577.1 + 119524 0.72 0.98156
Target:  5'- uGUGAUGGAGauGAGGAAUACGCUAAAa -3'
miRNA:   3'- -CGCUACCUUccCUUUUUGUGUGGUUU- -5'
9699 3' -46.8 NC_002577.1 + 121996 0.73 0.974041
Target:  5'- uGUGGgggaagGGAAGGGGGAGACG-GCCGAAa -3'
miRNA:   3'- -CGCUa-----CCUUCCCUUUUUGUgUGGUUU- -5'
9699 3' -46.8 NC_002577.1 + 122008 0.79 0.774931
Target:  5'- cGCGAUGcGGcGGGGGAAAAgGCGCCGAu -3'
miRNA:   3'- -CGCUAC-CU-UCCCUUUUUgUGUGGUUu -5'
9699 3' -46.8 NC_002577.1 + 122676 0.71 0.991573
Target:  5'- -gGGUGGAAGGGGGAuGgGUACCGAGg -3'
miRNA:   3'- cgCUACCUUCCCUUUuUgUGUGGUUU- -5'
9699 3' -46.8 NC_002577.1 + 123491 0.71 0.990303
Target:  5'- uCGGUGGAGGGGuguGGGAaACGCCGc- -3'
miRNA:   3'- cGCUACCUUCCCu--UUUUgUGUGGUuu -5'
9699 3' -46.8 NC_002577.1 + 124092 0.67 0.999432
Target:  5'- gGgGggGGGAGGGAGGGAaauaGCcgGCCGAAc -3'
miRNA:   3'- -CgCuaCCUUCCCUUUUUg---UG--UGGUUU- -5'
9699 3' -46.8 NC_002577.1 + 124520 0.67 0.99978
Target:  5'- uGCGA-GGggGGGGGcGACggGCgACCGGGa -3'
miRNA:   3'- -CGCUaCCuuCCCUUuUUG--UG-UGGUUU- -5'
9699 3' -46.8 NC_002577.1 + 124602 0.72 0.981339
Target:  5'- cGCGAaGGGuuaguugGGGGAGGGGCACGCgCAu- -3'
miRNA:   3'- -CGCUaCCU-------UCCCUUUUUGUGUG-GUuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.