miRNA display CGI


Results 1 - 20 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9699 3' -46.8 NC_002577.1 + 162971 0.73 0.96451
Target:  5'- gGgGggGGggGGGggGGGCGCGacuCCAAGc -3'
miRNA:   3'- -CgCuaCCuuCCCuuUUUGUGU---GGUUU- -5'
9699 3' -46.8 NC_002577.1 + 161812 0.72 0.976759
Target:  5'- uGUGGcUGGAAGGGGAcgGCGgucCGCCGGAg -3'
miRNA:   3'- -CGCU-ACCUUCCCUUuuUGU---GUGGUUU- -5'
9699 3' -46.8 NC_002577.1 + 159144 0.68 0.999124
Target:  5'- -gGcgGGGAGGGAAuuuGC-CACCAc- -3'
miRNA:   3'- cgCuaCCUUCCCUUuu-UGuGUGGUuu -5'
9699 3' -46.8 NC_002577.1 + 158302 0.69 0.997676
Target:  5'- gGCGGgcgGGggGGGcauuuGAAAgGCACCu-- -3'
miRNA:   3'- -CGCUa--CCuuCCCu----UUUUgUGUGGuuu -5'
9699 3' -46.8 NC_002577.1 + 157691 0.68 0.999292
Target:  5'- gGCGG-GGAGGGGGAGcGgGCACUc-- -3'
miRNA:   3'- -CGCUaCCUUCCCUUUuUgUGUGGuuu -5'
9699 3' -46.8 NC_002577.1 + 157005 0.7 0.995401
Target:  5'- ----cGGAGGGGAAGGACGCugaCAAGa -3'
miRNA:   3'- cgcuaCCUUCCCUUUUUGUGug-GUUU- -5'
9699 3' -46.8 NC_002577.1 + 156866 0.66 0.9999
Target:  5'- uGCGuagagGGAGGGGAGGuAgACGgCAGAg -3'
miRNA:   3'- -CGCua---CCUUCCCUUUuUgUGUgGUUU- -5'
9699 3' -46.8 NC_002577.1 + 156616 0.71 0.987314
Target:  5'- cGgGggGGGGuGGGggGGGCACGCCcGAg -3'
miRNA:   3'- -CgCuaCCUU-CCCuuUUUGUGUGGuUU- -5'
9699 3' -46.8 NC_002577.1 + 156017 0.67 0.999641
Target:  5'- aGCaAUGG--GGGAAAcGCGCGCCGGu -3'
miRNA:   3'- -CGcUACCuuCCCUUUuUGUGUGGUUu -5'
9699 3' -46.8 NC_002577.1 + 155136 0.71 0.990303
Target:  5'- gGUGGUGGu-GGGAGAGAaAUACCGAc -3'
miRNA:   3'- -CGCUACCuuCCCUUUUUgUGUGGUUu -5'
9699 3' -46.8 NC_002577.1 + 154963 0.68 0.999195
Target:  5'- cGUGggGGAGGGGggGccgGcccuacuugccccuaACGCACCGGc -3'
miRNA:   3'- -CGCuaCCUUCCCuuU---U---------------UGUGUGGUUu -5'
9699 3' -46.8 NC_002577.1 + 154858 0.68 0.998683
Target:  5'- gGgGggGGggGGGggGGGCGCGggUCGGGg -3'
miRNA:   3'- -CgCuaCCuuCCCuuUUUGUGU--GGUUU- -5'
9699 3' -46.8 NC_002577.1 + 154232 0.68 0.999124
Target:  5'- aGgGAUGaGggGGGAGuuGCcugcCGCCGAAc -3'
miRNA:   3'- -CgCUAC-CuuCCCUUuuUGu---GUGGUUU- -5'
9699 3' -46.8 NC_002577.1 + 153945 0.68 0.999292
Target:  5'- aGUGG-GGggGGGGAAGAUACAaUCGu- -3'
miRNA:   3'- -CGCUaCCuuCCCUUUUUGUGU-GGUuu -5'
9699 3' -46.8 NC_002577.1 + 152663 0.66 0.999922
Target:  5'- aGUGAacgacuuacaguuUGGAcuguaGGGGAGAAACAUuacCCGAAa -3'
miRNA:   3'- -CGCU-------------ACCU-----UCCCUUUUUGUGu--GGUUU- -5'
9699 3' -46.8 NC_002577.1 + 151705 0.68 0.999352
Target:  5'- -aGAaggGGAGGGGcggguuuugacuuuuAAAAGCACACCGc- -3'
miRNA:   3'- cgCUa--CCUUCCC---------------UUUUUGUGUGGUuu -5'
9699 3' -46.8 NC_002577.1 + 143963 0.67 0.999718
Target:  5'- gGgGggGGggGGGggGAugaauccacgGCACGCgCAGc -3'
miRNA:   3'- -CgCuaCCuuCCCuuUU----------UGUGUG-GUUu -5'
9699 3' -46.8 NC_002577.1 + 142480 0.68 0.998683
Target:  5'- gGgGggGGggGGGggGGGCGCGggUCGGGg -3'
miRNA:   3'- -CgCuaCCuuCCCuuUUUGUGU--GGUUU- -5'
9699 3' -46.8 NC_002577.1 + 142374 0.68 0.999195
Target:  5'- cGUGggGGAGGGGggGccgGcccuacuugccccuaACGCACCGGc -3'
miRNA:   3'- -CGCuaCCUUCCCuuU---U---------------UGUGUGGUUu -5'
9699 3' -46.8 NC_002577.1 + 142203 0.71 0.990303
Target:  5'- gGUGGUGGu-GGGAGAGAaAUACCGAc -3'
miRNA:   3'- -CGCUACCuuCCCUUUUUgUGUGGUUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.