miRNA display CGI


Results 1 - 20 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9699 3' -46.8 NC_002577.1 + 6635 1.09 0.022592
Target:  5'- uGCGAUGGAAGGGAAAAACACACCAAAc -3'
miRNA:   3'- -CGCUACCUUCCCUUUUUGUGUGGUUU- -5'
9699 3' -46.8 NC_002577.1 + 126963 0.68 0.999124
Target:  5'- cGUGggGGggGGGGGAGGCcugaACgGCCGGc -3'
miRNA:   3'- -CGCuaCCuuCCCUUUUUG----UG-UGGUUu -5'
9699 3' -46.8 NC_002577.1 + 142374 0.68 0.999195
Target:  5'- cGUGggGGAGGGGggGccgGcccuacuugccccuaACGCACCGGc -3'
miRNA:   3'- -CGCuaCCUUCCCuuU---U---------------UGUGUGGUUu -5'
9699 3' -46.8 NC_002577.1 + 100584 0.66 0.999924
Target:  5'- cGCGAU---GGGGAGcAACGCuACCGAGc -3'
miRNA:   3'- -CGCUAccuUCCCUUuUUGUG-UGGUUU- -5'
9699 3' -46.8 NC_002577.1 + 162971 0.73 0.96451
Target:  5'- gGgGggGGggGGGggGGGCGCGacuCCAAGc -3'
miRNA:   3'- -CgCuaCCuuCCCuuUUUGUGU---GGUUU- -5'
9699 3' -46.8 NC_002577.1 + 121996 0.73 0.974041
Target:  5'- uGUGGgggaagGGAAGGGGGAGACG-GCCGAAa -3'
miRNA:   3'- -CGCUa-----CCUUCCCUUUUUGUgUGGUUU- -5'
9699 3' -46.8 NC_002577.1 + 124602 0.72 0.981339
Target:  5'- cGCGAaGGGuuaguugGGGGAGGGGCACGCgCAu- -3'
miRNA:   3'- -CGCUaCCU-------UCCCUUUUUGUGUG-GUuu -5'
9699 3' -46.8 NC_002577.1 + 140721 0.71 0.987314
Target:  5'- cGgGggGGGGuGGGggGGGCACGCCcGAg -3'
miRNA:   3'- -CgCuaCCUU-CCCuuUUUGUGUGGuUU- -5'
9699 3' -46.8 NC_002577.1 + 122676 0.71 0.991573
Target:  5'- -gGGUGGAAGGGGGAuGgGUACCGAGg -3'
miRNA:   3'- cgCUACCUUCCCUUUuUgUGUGGUUU- -5'
9699 3' -46.8 NC_002577.1 + 25905 0.68 0.998923
Target:  5'- cGCGAUGGcAGGGAGAAuUACuuguCCc-- -3'
miRNA:   3'- -CGCUACCuUCCCUUUUuGUGu---GGuuu -5'
9699 3' -46.8 NC_002577.1 + 7451 0.69 0.9984
Target:  5'- gGCcuUGGAAGGGGGAAAgACGCa--- -3'
miRNA:   3'- -CGcuACCUUCCCUUUUUgUGUGguuu -5'
9699 3' -46.8 NC_002577.1 + 142203 0.71 0.990303
Target:  5'- gGUGGUGGu-GGGAGAGAaAUACCGAc -3'
miRNA:   3'- -CGCUACCuuCCCUUUUUgUGUGGUUu -5'
9699 3' -46.8 NC_002577.1 + 126749 0.94 0.159625
Target:  5'- uGCGAUGGAAGGGAAAGGCAaACCGGAa -3'
miRNA:   3'- -CGCUACCUUCCCUUUUUGUgUGGUUU- -5'
9699 3' -46.8 NC_002577.1 + 154858 0.68 0.998683
Target:  5'- gGgGggGGggGGGggGGGCGCGggUCGGGg -3'
miRNA:   3'- -CgCuaCCuuCCCuuUUUGUGU--GGUUU- -5'
9699 3' -46.8 NC_002577.1 + 11606 0.79 0.774931
Target:  5'- cGCGAUGcGGcGGGGGAAAAgGCGCCGAu -3'
miRNA:   3'- -CGCUAC-CU-UCCCUUUUUgUGUGGUUu -5'
9699 3' -46.8 NC_002577.1 + 123491 0.71 0.990303
Target:  5'- uCGGUGGAGGGGuguGGGAaACGCCGc- -3'
miRNA:   3'- cGCUACCUUCCCu--UUUUgUGUGGUuu -5'
9699 3' -46.8 NC_002577.1 + 139029 0.68 0.998683
Target:  5'- cGCGGUGGcgggcGGGggGGGCAUuUCGAAa -3'
miRNA:   3'- -CGCUACCuu---CCCuuUUUGUGuGGUUU- -5'
9699 3' -46.8 NC_002577.1 + 138194 0.68 0.999124
Target:  5'- -gGcgGGGAGGGAAuuuGC-CACCAc- -3'
miRNA:   3'- cgCuaCCUUCCCUUuu-UGuGUGGUuu -5'
9699 3' -46.8 NC_002577.1 + 41103 0.75 0.922081
Target:  5'- gGCcGUGGAAGGGAAuAGCA-ACCAAGa -3'
miRNA:   3'- -CGcUACCUUCCCUUuUUGUgUGGUUU- -5'
9699 3' -46.8 NC_002577.1 + 161812 0.72 0.976759
Target:  5'- uGUGGcUGGAAGGGGAcgGCGgucCGCCGGAg -3'
miRNA:   3'- -CGCU-ACCUUCCCUUuuUGU---GUGGUUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.