Results 21 - 40 of 82 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9699 | 3' | -46.8 | NC_002577.1 | + | 139647 | 0.68 | 0.999292 |
Target: 5'- gGCGG-GGAGGGGGAGcGgGCACUc-- -3' miRNA: 3'- -CGCUaCCUUCCCUUUuUgUGUGGuuu -5' |
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9699 | 3' | -46.8 | NC_002577.1 | + | 142374 | 0.68 | 0.999195 |
Target: 5'- cGUGggGGAGGGGggGccgGcccuacuugccccuaACGCACCGGc -3' miRNA: 3'- -CGCuaCCUUCCCuuU---U---------------UGUGUGGUUu -5' |
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9699 | 3' | -46.8 | NC_002577.1 | + | 142203 | 0.71 | 0.990303 |
Target: 5'- gGUGGUGGu-GGGAGAGAaAUACCGAc -3' miRNA: 3'- -CGCUACCuuCCCUUUUUgUGUGGUUu -5' |
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9699 | 3' | -46.8 | NC_002577.1 | + | 41103 | 0.75 | 0.922081 |
Target: 5'- gGCcGUGGAAGGGAAuAGCA-ACCAAGa -3' miRNA: 3'- -CGcUACCUUCCCUUuUUGUgUGGUUU- -5' |
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9699 | 3' | -46.8 | NC_002577.1 | + | 43940 | 0.66 | 0.999829 |
Target: 5'- gGCGcccaaaaacuGUGGAAcGGGAGGAGCucuGCCGAGc -3' miRNA: 3'- -CGC----------UACCUU-CCCUUUUUGug-UGGUUU- -5' |
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9699 | 3' | -46.8 | NC_002577.1 | + | 128215 | 0.67 | 0.999547 |
Target: 5'- uGUGA-GGAAGGGGu-AACgACGCCGu- -3' miRNA: 3'- -CGCUaCCUUCCCUuuUUG-UGUGGUuu -5' |
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9699 | 3' | -46.8 | NC_002577.1 | + | 126963 | 0.68 | 0.999124 |
Target: 5'- cGUGggGGggGGGGGAGGCcugaACgGCCGGc -3' miRNA: 3'- -CGCuaCCuuCCCUUUUUG----UG-UGGUUu -5' |
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9699 | 3' | -46.8 | NC_002577.1 | + | 11606 | 0.79 | 0.774931 |
Target: 5'- cGCGAUGcGGcGGGGGAAAAgGCGCCGAu -3' miRNA: 3'- -CGCUAC-CU-UCCCUUUUUgUGUGGUUu -5' |
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9699 | 3' | -46.8 | NC_002577.1 | + | 126294 | 0.67 | 0.999547 |
Target: 5'- gGgGggGGggGGGAGaugcGAACGC-CCAc- -3' miRNA: 3'- -CgCuaCCuuCCCUU----UUUGUGuGGUuu -5' |
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9699 | 3' | -46.8 | NC_002577.1 | + | 126749 | 0.94 | 0.159625 |
Target: 5'- uGCGAUGGAAGGGAAAGGCAaACCGGAa -3' miRNA: 3'- -CGCUACCUUCCCUUUUUGUgUGGUUU- -5' |
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9699 | 3' | -46.8 | NC_002577.1 | + | 138194 | 0.68 | 0.999124 |
Target: 5'- -gGcgGGGAGGGAAuuuGC-CACCAc- -3' miRNA: 3'- cgCuaCCUUCCCUUuu-UGuGUGGUuu -5' |
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9699 | 3' | -46.8 | NC_002577.1 | + | 151705 | 0.68 | 0.999352 |
Target: 5'- -aGAaggGGAGGGGcggguuuugacuuuuAAAAGCACACCGc- -3' miRNA: 3'- cgCUa--CCUUCCC---------------UUUUUGUGUGGUuu -5' |
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9699 | 3' | -46.8 | NC_002577.1 | + | 154858 | 0.68 | 0.998683 |
Target: 5'- gGgGggGGggGGGggGGGCGCGggUCGGGg -3' miRNA: 3'- -CgCuaCCuuCCCuuUUUGUGU--GGUUU- -5' |
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9699 | 3' | -46.8 | NC_002577.1 | + | 122676 | 0.71 | 0.991573 |
Target: 5'- -gGGUGGAAGGGGGAuGgGUACCGAGg -3' miRNA: 3'- cgCUACCUUCCCUUUuUgUGUGGUUU- -5' |
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9699 | 3' | -46.8 | NC_002577.1 | + | 124602 | 0.72 | 0.981339 |
Target: 5'- cGCGAaGGGuuaguugGGGGAGGGGCACGCgCAu- -3' miRNA: 3'- -CGCUaCCU-------UCCCUUUUUGUGUG-GUuu -5' |
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9699 | 3' | -46.8 | NC_002577.1 | + | 162971 | 0.73 | 0.96451 |
Target: 5'- gGgGggGGggGGGggGGGCGCGacuCCAAGc -3' miRNA: 3'- -CgCuaCCuuCCCuuUUUGUGU---GGUUU- -5' |
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9699 | 3' | -46.8 | NC_002577.1 | + | 129363 | 0.66 | 0.9999 |
Target: 5'- gGgGGUGGggGGGAu--AUGCgACCGc- -3' miRNA: 3'- -CgCUACCuuCCCUuuuUGUG-UGGUuu -5' |
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9699 | 3' | -46.8 | NC_002577.1 | + | 127040 | 0.66 | 0.999829 |
Target: 5'- uGCGcgGGGAGuGGGGcgGCGguCCAAu -3' miRNA: 3'- -CGCuaCCUUC-CCUUuuUGUguGGUUu -5' |
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9699 | 3' | -46.8 | NC_002577.1 | + | 58028 | 0.67 | 0.99978 |
Target: 5'- ----gGGGAGGGAAGGGCcucgcuagguaGCGCCAc- -3' miRNA: 3'- cgcuaCCUUCCCUUUUUG-----------UGUGGUuu -5' |
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9699 | 3' | -46.8 | NC_002577.1 | + | 141321 | 0.67 | 0.999641 |
Target: 5'- aGCaAUGG--GGGAAAcGCGCGCCGGu -3' miRNA: 3'- -CGcUACCuuCCCUUUuUGUGUGGUUu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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