miRNA display CGI


Results 1 - 6 of 6 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
97 5' -59.9 AC_000006.1 + 21534 0.67 0.288026
Target:  5'- aUCaGACUGGGGUACuuuACGC-UGGCCa- -3'
miRNA:   3'- -AGcUUGGCCCCAUG---UGCGcGCCGGau -5'
97 5' -59.9 AC_000006.1 + 23306 0.66 0.342386
Target:  5'- uUCGAAgggcucggUCGGGacgagACGCGCGCGGCg-- -3'
miRNA:   3'- -AGCUU--------GGCCCca---UGUGCGCGCCGgau -5'
97 5' -59.9 AC_000006.1 + 19745 0.66 0.367848
Target:  5'- cCGGGauGGGGUagaGCAUGUugGCGGCCg- -3'
miRNA:   3'- aGCUUggCCCCA---UGUGCG--CGCCGGau -5'
97 5' -59.9 AC_000006.1 + 15553 0.66 0.32613
Target:  5'- gCGAGuCCugccugcggGGGGUGCaguggcggcgcgGCGCGCGGCUc- -3'
miRNA:   3'- aGCUU-GG---------CCCCAUG------------UGCGCGCCGGau -5'
97 5' -59.9 AC_000006.1 + 23136 0.71 0.148212
Target:  5'- gUUGGGCUggcguuGGGGgGCACGCGCGGCg-- -3'
miRNA:   3'- -AGCUUGG------CCCCaUGUGCGCGCCGgau -5'
97 5' -59.9 AC_000006.1 + 10323 1.07 0.000285
Target:  5'- cUCGAACCGGGGUACACGCGCGGCCUAa -3'
miRNA:   3'- -AGCUUGGCCCCAUGUGCGCGCCGGAU- -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.