miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9703 3' -48.4 NC_002577.1 + 124047 1.13 0.01014
Target:  5'- cGGACCCAAACGACAUCGCUCCAAAAGa -3'
miRNA:   3'- -CCUGGGUUUGCUGUAGCGAGGUUUUC- -5'
9703 3' -48.4 NC_002577.1 + 9567 1.13 0.01014
Target:  5'- cGGACCCAAACGACAUCGCUCCAAAAGa -3'
miRNA:   3'- -CCUGGGUUUGCUGUAGCGAGGUUUUC- -5'
9703 3' -48.4 NC_002577.1 + 160625 0.76 0.8472
Target:  5'- aGGCCCGGcgucGCGGCA-CGCUUCAGGGGg -3'
miRNA:   3'- cCUGGGUU----UGCUGUaGCGAGGUUUUC- -5'
9703 3' -48.4 NC_002577.1 + 140271 0.74 0.924529
Target:  5'- cGGGCUgGGACucgGUCGCUCCGGAGGg -3'
miRNA:   3'- -CCUGGgUUUGcugUAGCGAGGUUUUC- -5'
9703 3' -48.4 NC_002577.1 + 157067 0.74 0.924529
Target:  5'- cGGGCUgGGACucgGUCGCUCCGGAGGg -3'
miRNA:   3'- -CCUGGgUUUGcugUAGCGAGGUUUUC- -5'
9703 3' -48.4 NC_002577.1 + 5875 0.73 0.935314
Target:  5'- gGGGCCCuGGCGAgAUCGgCUCUGAAu- -3'
miRNA:   3'- -CCUGGGuUUGCUgUAGC-GAGGUUUuc -5'
9703 3' -48.4 NC_002577.1 + 57478 0.72 0.971397
Target:  5'- aGGaACCCAAAUGAaAUCGUcgCCGGGGGg -3'
miRNA:   3'- -CC-UGGGUUUGCUgUAGCGa-GGUUUUC- -5'
9703 3' -48.4 NC_002577.1 + 129239 0.71 0.976864
Target:  5'- cGACCCccGAACGAUgcaCGCUcCCAAGAGu -3'
miRNA:   3'- cCUGGG--UUUGCUGua-GCGA-GGUUUUC- -5'
9703 3' -48.4 NC_002577.1 + 4375 0.71 0.976864
Target:  5'- cGACCCccGAACGAUgcaCGCUcCCAAGAGu -3'
miRNA:   3'- cCUGGG--UUUGCUGua-GCGA-GGUUUUC- -5'
9703 3' -48.4 NC_002577.1 + 49484 0.71 0.979289
Target:  5'- uGGAUCCuauaGACGUUGCUCUAcAGGa -3'
miRNA:   3'- -CCUGGGuuugCUGUAGCGAGGUuUUC- -5'
9703 3' -48.4 NC_002577.1 + 139913 0.71 0.981521
Target:  5'- cGACCCuGGACGAUauGUCGCcgUCCGAGGa -3'
miRNA:   3'- cCUGGG-UUUGCUG--UAGCG--AGGUUUUc -5'
9703 3' -48.4 NC_002577.1 + 157425 0.71 0.981521
Target:  5'- cGACCCuGGACGAUauGUCGCcgUCCGAGGa -3'
miRNA:   3'- cCUGGG-UUUGCUG--UAGCG--AGGUUUUc -5'
9703 3' -48.4 NC_002577.1 + 61931 0.71 0.982972
Target:  5'- aGACUCAuacACGACAUuauucaauggguucCGCUCCAGGAa -3'
miRNA:   3'- cCUGGGUu--UGCUGUA--------------GCGAGGUUUUc -5'
9703 3' -48.4 NC_002577.1 + 99733 0.7 0.988686
Target:  5'- gGGACCCccucgucGAUGGCGUCGCgUCGAAGu -3'
miRNA:   3'- -CCUGGGu------UUGCUGUAGCGaGGUUUUc -5'
9703 3' -48.4 NC_002577.1 + 138338 0.7 0.989949
Target:  5'- cGGGCCUcucggcgGAAcCGACAggCGCUCCGGGGc -3'
miRNA:   3'- -CCUGGG-------UUU-GCUGUa-GCGAGGUUUUc -5'
9703 3' -48.4 NC_002577.1 + 109574 0.7 0.990083
Target:  5'- cGACCCGAAgcCGGCAcacucucucUCGCUCCu---- -3'
miRNA:   3'- cCUGGGUUU--GCUGU---------AGCGAGGuuuuc -5'
9703 3' -48.4 NC_002577.1 + 119296 0.7 0.991341
Target:  5'- -cACCCAcuUGAgAUCGCUgCGAAGGg -3'
miRNA:   3'- ccUGGGUuuGCUgUAGCGAgGUUUUC- -5'
9703 3' -48.4 NC_002577.1 + 58354 0.69 0.993478
Target:  5'- -cGCgCUAAACGGCAUCGUccUCCGAAu- -3'
miRNA:   3'- ccUG-GGUUUGCUGUAGCG--AGGUUUuc -5'
9703 3' -48.4 NC_002577.1 + 10556 0.69 0.994375
Target:  5'- cGACCC--GCGACcgUGUUCCGcGAGc -3'
miRNA:   3'- cCUGGGuuUGCUGuaGCGAGGUuUUC- -5'
9703 3' -48.4 NC_002577.1 + 123058 0.69 0.994375
Target:  5'- cGACCC--GCGACcgUGUUCCGcGAGc -3'
miRNA:   3'- cCUGGGuuUGCUGuaGCGAGGUuUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.