miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9703 3' -48.4 NC_002577.1 + 1156 0.67 0.998799
Target:  5'- cGGACCgCAGcCuuuGCGUCGCcgCCGGGAGa -3'
miRNA:   3'- -CCUGG-GUUuGc--UGUAGCGa-GGUUUUC- -5'
9703 3' -48.4 NC_002577.1 + 4375 0.71 0.976864
Target:  5'- cGACCCccGAACGAUgcaCGCUcCCAAGAGu -3'
miRNA:   3'- cCUGGG--UUUGCUGua-GCGA-GGUUUUC- -5'
9703 3' -48.4 NC_002577.1 + 4820 0.67 0.999014
Target:  5'- aGGACCgAGGCGGC---GUUCCAAAc- -3'
miRNA:   3'- -CCUGGgUUUGCUGuagCGAGGUUUuc -5'
9703 3' -48.4 NC_002577.1 + 5875 0.73 0.935314
Target:  5'- gGGGCCCuGGCGAgAUCGgCUCUGAAu- -3'
miRNA:   3'- -CCUGGGuUUGCUgUAGC-GAGGUUUuc -5'
9703 3' -48.4 NC_002577.1 + 7597 0.69 0.99517
Target:  5'- gGGAUCCGAaccguGCGGCGggaagGCUCCGAGu- -3'
miRNA:   3'- -CCUGGGUU-----UGCUGUag---CGAGGUUUuc -5'
9703 3' -48.4 NC_002577.1 + 9567 1.13 0.01014
Target:  5'- cGGACCCAAACGACAUCGCUCCAAAAGa -3'
miRNA:   3'- -CCUGGGUUUGCUGUAGCGAGGUUUUC- -5'
9703 3' -48.4 NC_002577.1 + 10556 0.69 0.994375
Target:  5'- cGACCC--GCGACcgUGUUCCGcGAGc -3'
miRNA:   3'- cCUGGGuuUGCUGuaGCGAGGUuUUC- -5'
9703 3' -48.4 NC_002577.1 + 11804 0.67 0.998799
Target:  5'- cGACCCGGGCGACGaCGCgggCGAc-- -3'
miRNA:   3'- cCUGGGUUUGCUGUaGCGag-GUUuuc -5'
9703 3' -48.4 NC_002577.1 + 15899 0.66 0.999474
Target:  5'- cGACCUuGGCGACAUaucCGCUCgAGuGGu -3'
miRNA:   3'- cCUGGGuUUGCUGUA---GCGAGgUUuUC- -5'
9703 3' -48.4 NC_002577.1 + 28943 0.66 0.999579
Target:  5'- cGGGCCCGAugGAgggcuggguacCGUCGCaauaacggCCGAu-- -3'
miRNA:   3'- -CCUGGGUUugCU-----------GUAGCGa-------GGUUuuc -5'
9703 3' -48.4 NC_002577.1 + 41517 0.66 0.999474
Target:  5'- -uGCCCAcgcgucggacGCGACGuUCGCUCCuauAAGAGg -3'
miRNA:   3'- ccUGGGUu---------UGCUGU-AGCGAGG---UUUUC- -5'
9703 3' -48.4 NC_002577.1 + 49484 0.71 0.979289
Target:  5'- uGGAUCCuauaGACGUUGCUCUAcAGGa -3'
miRNA:   3'- -CCUGGGuuugCUGUAGCGAGGUuUUC- -5'
9703 3' -48.4 NC_002577.1 + 57478 0.72 0.971397
Target:  5'- aGGaACCCAAAUGAaAUCGUcgCCGGGGGg -3'
miRNA:   3'- -CC-UGGGUUUGCUgUAGCGa-GGUUUUC- -5'
9703 3' -48.4 NC_002577.1 + 58354 0.69 0.993478
Target:  5'- -cGCgCUAAACGGCAUCGUccUCCGAAu- -3'
miRNA:   3'- ccUG-GGUUUGCUGUAGCG--AGGUUUuc -5'
9703 3' -48.4 NC_002577.1 + 59608 0.67 0.999014
Target:  5'- -aACCCGAGCGcCAUCGCgagcgcuaCCuuAGGg -3'
miRNA:   3'- ccUGGGUUUGCuGUAGCGa-------GGuuUUC- -5'
9703 3' -48.4 NC_002577.1 + 61044 0.67 0.999196
Target:  5'- aGGGCCCAAAaCGuaACGUCGCg--GGAAGc -3'
miRNA:   3'- -CCUGGGUUU-GC--UGUAGCGaggUUUUC- -5'
9703 3' -48.4 NC_002577.1 + 61931 0.71 0.982972
Target:  5'- aGACUCAuacACGACAUuauucaauggguucCGCUCCAGGAa -3'
miRNA:   3'- cCUGGGUu--UGCUGUA--------------GCGAGGUUUUc -5'
9703 3' -48.4 NC_002577.1 + 66875 0.68 0.997897
Target:  5'- cGGuuguUUCGAACGACGUgGCUaCCGGGGGc -3'
miRNA:   3'- -CCu---GGGUUUGCUGUAgCGA-GGUUUUC- -5'
9703 3' -48.4 NC_002577.1 + 77900 0.66 0.999735
Target:  5'- gGGGCaCGGAuCGugAUCGCcgcagaaugUCCAGAAGc -3'
miRNA:   3'- -CCUGgGUUU-GCugUAGCG---------AGGUUUUC- -5'
9703 3' -48.4 NC_002577.1 + 87718 0.67 0.999196
Target:  5'- gGGGCCaCAAA--ACAcUCGgUCCAAAAGg -3'
miRNA:   3'- -CCUGG-GUUUgcUGU-AGCgAGGUUUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.