miRNA display CGI


Results 21 - 40 of 59 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9703 3' -48.4 NC_002577.1 + 98949 0.66 0.999735
Target:  5'- uGugCCGAugGGC-UUG-UCCAAAAGg -3'
miRNA:   3'- cCugGGUUugCUGuAGCgAGGUUUUC- -5'
9703 3' -48.4 NC_002577.1 + 99733 0.7 0.988686
Target:  5'- gGGACCCccucgucGAUGGCGUCGCgUCGAAGu -3'
miRNA:   3'- -CCUGGGu------UUGCUGUAGCGaGGUUUUc -5'
9703 3' -48.4 NC_002577.1 + 103327 0.67 0.998544
Target:  5'- aGACCCGcccGACGGCAUUGCgacagcgauUCguGGAGa -3'
miRNA:   3'- cCUGGGU---UUGCUGUAGCG---------AGguUUUC- -5'
9703 3' -48.4 NC_002577.1 + 104993 0.69 0.995805
Target:  5'- aGGCUCGAAUGGCucugaagGUCGCcaucgaUCCAGAAGa -3'
miRNA:   3'- cCUGGGUUUGCUG-------UAGCG------AGGUUUUC- -5'
9703 3' -48.4 NC_002577.1 + 109574 0.7 0.990083
Target:  5'- cGACCCGAAgcCGGCAcacucucucUCGCUCCu---- -3'
miRNA:   3'- cCUGGGUUU--GCUGU---------AGCGAGGuuuuc -5'
9703 3' -48.4 NC_002577.1 + 109975 0.67 0.999014
Target:  5'- aGACUgcuaUGAAUGAUAUCGCUCUAGuGGa -3'
miRNA:   3'- cCUGG----GUUUGCUGUAGCGAGGUUuUC- -5'
9703 3' -48.4 NC_002577.1 + 110567 0.66 0.999348
Target:  5'- cGGACgCGAGCGAUAuUCGUgugCCGGu-- -3'
miRNA:   3'- -CCUGgGUUUGCUGU-AGCGa--GGUUuuc -5'
9703 3' -48.4 NC_002577.1 + 119296 0.7 0.991341
Target:  5'- -cACCCAcuUGAgAUCGCUgCGAAGGg -3'
miRNA:   3'- ccUGGGUuuGCUgUAGCGAgGUUUUC- -5'
9703 3' -48.4 NC_002577.1 + 123058 0.69 0.994375
Target:  5'- cGACCC--GCGACcgUGUUCCGcGAGc -3'
miRNA:   3'- cCUGGGuuUGCUGuaGCGAGGUuUUC- -5'
9703 3' -48.4 NC_002577.1 + 124047 1.13 0.01014
Target:  5'- cGGACCCAAACGACAUCGCUCCAAAAGa -3'
miRNA:   3'- -CCUGGGUUUGCUGUAGCGAGGUUUUC- -5'
9703 3' -48.4 NC_002577.1 + 126017 0.69 0.99517
Target:  5'- gGGAUCCGAaccguGCGGCGggaagGCUCCGAGu- -3'
miRNA:   3'- -CCUGGGUU-----UGCUGUag---CGAGGUUUuc -5'
9703 3' -48.4 NC_002577.1 + 128793 0.67 0.999014
Target:  5'- aGGACCgAGGCGg---CGUUCCAAAc- -3'
miRNA:   3'- -CCUGGgUUUGCuguaGCGAGGUUUuc -5'
9703 3' -48.4 NC_002577.1 + 129239 0.71 0.976864
Target:  5'- cGACCCccGAACGAUgcaCGCUcCCAAGAGu -3'
miRNA:   3'- cCUGGG--UUUGCUGua-GCGA-GGUUUUC- -5'
9703 3' -48.4 NC_002577.1 + 132457 0.67 0.998799
Target:  5'- cGGACCgCAGcCuuuGCGUCGCcgCCGGGAGa -3'
miRNA:   3'- -CCUGG-GUUuGc--UGUAGCGa-GGUUUUC- -5'
9703 3' -48.4 NC_002577.1 + 134594 0.67 0.998246
Target:  5'- uGGACUCAGAUcGCcgCGUccuuUCCGAAGGc -3'
miRNA:   3'- -CCUGGGUUUGcUGuaGCG----AGGUUUUC- -5'
9703 3' -48.4 NC_002577.1 + 135005 0.66 0.999735
Target:  5'- aGGAagaCCGcgcGGCGACAgCGC-CUAGAAGa -3'
miRNA:   3'- -CCUg--GGU---UUGCUGUaGCGaGGUUUUC- -5'
9703 3' -48.4 NC_002577.1 + 135398 0.68 0.997897
Target:  5'- cGGGCCaaUAAACuGcACGUCGCUUCGGGAa -3'
miRNA:   3'- -CCUGG--GUUUG-C-UGUAGCGAGGUUUUc -5'
9703 3' -48.4 NC_002577.1 + 135664 0.69 0.995871
Target:  5'- aGGACCgucuGCGACGUuugcCGCUCCGu--- -3'
miRNA:   3'- -CCUGGguu-UGCUGUA----GCGAGGUuuuc -5'
9703 3' -48.4 NC_002577.1 + 136132 0.67 0.998799
Target:  5'- cGGcccGCCCAGGCGGCG-CuCUCCGGuAGg -3'
miRNA:   3'- -CC---UGGGUUUGCUGUaGcGAGGUUuUC- -5'
9703 3' -48.4 NC_002577.1 + 136335 0.69 0.995871
Target:  5'- -cAUCCAAGCGguGCG-CGCUCUGAGAGa -3'
miRNA:   3'- ccUGGGUUUGC--UGUaGCGAGGUUUUC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.