miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9703 3' -48.4 NC_002577.1 + 162734 0.67 0.998246
Target:  5'- uGGACUCAGAUcGCcgCGUccuuUCCGAAGGc -3'
miRNA:   3'- -CCUGGGUUUGcUGuaGCG----AGGUUUUC- -5'
9703 3' -48.4 NC_002577.1 + 162323 0.66 0.999735
Target:  5'- aGGAagaCCGcgcGGCGACAgCGC-CUAGAAGa -3'
miRNA:   3'- -CCUg--GGU---UUGCUGUaGCGaGGUUUUC- -5'
9703 3' -48.4 NC_002577.1 + 161940 0.68 0.997897
Target:  5'- cGGGCCaaUAAACuGcACGUCGCUUCGGGAa -3'
miRNA:   3'- -CCUGG--GUUUG-C-UGUAGCGAGGUUUUc -5'
9703 3' -48.4 NC_002577.1 + 161206 0.67 0.998799
Target:  5'- cGGcccGCCCAGGCGGCG-CuCUCCGGuAGg -3'
miRNA:   3'- -CC---UGGGUUUGCUGUaGcGAGGUUuUC- -5'
9703 3' -48.4 NC_002577.1 + 161003 0.69 0.995871
Target:  5'- -cAUCCAAGCGguGCG-CGCUCUGAGAGa -3'
miRNA:   3'- ccUGGGUUUGC--UGUaGCGAGGUUUUC- -5'
9703 3' -48.4 NC_002577.1 + 160625 0.76 0.8472
Target:  5'- aGGCCCGGcgucGCGGCA-CGCUUCAGGGGg -3'
miRNA:   3'- cCUGGGUU----UGCUGUaGCGAGGUUUUC- -5'
9703 3' -48.4 NC_002577.1 + 160227 0.67 0.998544
Target:  5'- cGACCCAG--GGCAUCGCcaaggCCGAGc- -3'
miRNA:   3'- cCUGGGUUugCUGUAGCGa----GGUUUuc -5'
9703 3' -48.4 NC_002577.1 + 158999 0.66 0.999579
Target:  5'- cGGGCCUcucggcGGAcacCGACAggCGCUCCGGGGc -3'
miRNA:   3'- -CCUGGG------UUU---GCUGUa-GCGAGGUUUUc -5'
9703 3' -48.4 NC_002577.1 + 158034 0.66 0.999579
Target:  5'- gGGAUUCAGaggGCGGCGUucCGUUCCAGu-- -3'
miRNA:   3'- -CCUGGGUU---UGCUGUA--GCGAGGUUuuc -5'
9703 3' -48.4 NC_002577.1 + 157425 0.71 0.981521
Target:  5'- cGACCCuGGACGAUauGUCGCcgUCCGAGGa -3'
miRNA:   3'- cCUGGG-UUUGCUG--UAGCG--AGGUUUUc -5'
9703 3' -48.4 NC_002577.1 + 157067 0.74 0.924529
Target:  5'- cGGGCUgGGACucgGUCGCUCCGGAGGg -3'
miRNA:   3'- -CCUGGgUUUGcugUAGCGAGGUUUUC- -5'
9703 3' -48.4 NC_002577.1 + 153473 0.67 0.998799
Target:  5'- -cGCCCGGugGGCAcaagCGCUUgCGGGAGg -3'
miRNA:   3'- ccUGGGUUugCUGUa---GCGAG-GUUUUC- -5'
9703 3' -48.4 NC_002577.1 + 143215 0.69 0.994375
Target:  5'- aGGACC---AUGGgGUCGCgUCCGGGAGg -3'
miRNA:   3'- -CCUGGguuUGCUgUAGCG-AGGUUUUC- -5'
9703 3' -48.4 NC_002577.1 + 140271 0.74 0.924529
Target:  5'- cGGGCUgGGACucgGUCGCUCCGGAGGg -3'
miRNA:   3'- -CCUGGgUUUGcugUAGCGAGGUUUUC- -5'
9703 3' -48.4 NC_002577.1 + 139913 0.71 0.981521
Target:  5'- cGACCCuGGACGAUauGUCGCcgUCCGAGGa -3'
miRNA:   3'- cCUGGG-UUUGCUG--UAGCG--AGGUUUUc -5'
9703 3' -48.4 NC_002577.1 + 139304 0.66 0.999579
Target:  5'- gGGAUUCAGaggGCGGCGUucCGUUCCAGu-- -3'
miRNA:   3'- -CCUGGGUU---UGCUGUA--GCGAGGUUuuc -5'
9703 3' -48.4 NC_002577.1 + 138338 0.7 0.989949
Target:  5'- cGGGCCUcucggcgGAAcCGACAggCGCUCCGGGGc -3'
miRNA:   3'- -CCUGGG-------UUU-GCUGUa-GCGAGGUUUUc -5'
9703 3' -48.4 NC_002577.1 + 137111 0.67 0.998544
Target:  5'- cGACCCAG--GGCAUCGCcaaggCCGAGc- -3'
miRNA:   3'- cCUGGGUUugCUGUAGCGa----GGUUUuc -5'
9703 3' -48.4 NC_002577.1 + 136713 0.67 0.998799
Target:  5'- aGGCCCGGcgucGCG-CA-CGCUUCAGGGGg -3'
miRNA:   3'- cCUGGGUU----UGCuGUaGCGAGGUUUUC- -5'
9703 3' -48.4 NC_002577.1 + 136335 0.69 0.995871
Target:  5'- -cAUCCAAGCGguGCG-CGCUCUGAGAGa -3'
miRNA:   3'- ccUGGGUUUGC--UGUaGCGAGGUUUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.