Results 1 - 20 of 59 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9703 | 3' | -48.4 | NC_002577.1 | + | 9567 | 1.13 | 0.01014 |
Target: 5'- cGGACCCAAACGACAUCGCUCCAAAAGa -3' miRNA: 3'- -CCUGGGUUUGCUGUAGCGAGGUUUUC- -5' |
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9703 | 3' | -48.4 | NC_002577.1 | + | 11804 | 0.67 | 0.998799 |
Target: 5'- cGACCCGGGCGACGaCGCgggCGAc-- -3' miRNA: 3'- cCUGGGUUUGCUGUaGCGag-GUUuuc -5' |
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9703 | 3' | -48.4 | NC_002577.1 | + | 153473 | 0.67 | 0.998799 |
Target: 5'- -cGCCCGGugGGCAcaagCGCUUgCGGGAGg -3' miRNA: 3'- ccUGGGUUugCUGUa---GCGAG-GUUUUC- -5' |
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9703 | 3' | -48.4 | NC_002577.1 | + | 162323 | 0.66 | 0.999735 |
Target: 5'- aGGAagaCCGcgcGGCGACAgCGC-CUAGAAGa -3' miRNA: 3'- -CCUg--GGU---UUGCUGUaGCGaGGUUUUC- -5' |
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9703 | 3' | -48.4 | NC_002577.1 | + | 157425 | 0.71 | 0.981521 |
Target: 5'- cGACCCuGGACGAUauGUCGCcgUCCGAGGa -3' miRNA: 3'- cCUGGG-UUUGCUG--UAGCG--AGGUUUUc -5' |
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9703 | 3' | -48.4 | NC_002577.1 | + | 119296 | 0.7 | 0.991341 |
Target: 5'- -cACCCAcuUGAgAUCGCUgCGAAGGg -3' miRNA: 3'- ccUGGGUuuGCUgUAGCGAgGUUUUC- -5' |
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9703 | 3' | -48.4 | NC_002577.1 | + | 10556 | 0.69 | 0.994375 |
Target: 5'- cGACCC--GCGACcgUGUUCCGcGAGc -3' miRNA: 3'- cCUGGGuuUGCUGuaGCGAGGUuUUC- -5' |
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9703 | 3' | -48.4 | NC_002577.1 | + | 143215 | 0.69 | 0.994375 |
Target: 5'- aGGACC---AUGGgGUCGCgUCCGGGAGg -3' miRNA: 3'- -CCUGGguuUGCUgUAGCG-AGGUUUUC- -5' |
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9703 | 3' | -48.4 | NC_002577.1 | + | 66875 | 0.68 | 0.997897 |
Target: 5'- cGGuuguUUCGAACGACGUgGCUaCCGGGGGc -3' miRNA: 3'- -CCu---GGGUUUGCUGUAgCGA-GGUUUUC- -5' |
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9703 | 3' | -48.4 | NC_002577.1 | + | 1156 | 0.67 | 0.998799 |
Target: 5'- cGGACCgCAGcCuuuGCGUCGCcgCCGGGAGa -3' miRNA: 3'- -CCUGG-GUUuGc--UGUAGCGa-GGUUUUC- -5' |
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9703 | 3' | -48.4 | NC_002577.1 | + | 134594 | 0.67 | 0.998246 |
Target: 5'- uGGACUCAGAUcGCcgCGUccuuUCCGAAGGc -3' miRNA: 3'- -CCUGGGUUUGcUGuaGCG----AGGUUUUC- -5' |
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9703 | 3' | -48.4 | NC_002577.1 | + | 136335 | 0.69 | 0.995871 |
Target: 5'- -cAUCCAAGCGguGCG-CGCUCUGAGAGa -3' miRNA: 3'- ccUGGGUUUGC--UGUaGCGAGGUUUUC- -5' |
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9703 | 3' | -48.4 | NC_002577.1 | + | 140271 | 0.74 | 0.924529 |
Target: 5'- cGGGCUgGGACucgGUCGCUCCGGAGGg -3' miRNA: 3'- -CCUGGgUUUGcugUAGCGAGGUUUUC- -5' |
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9703 | 3' | -48.4 | NC_002577.1 | + | 137111 | 0.67 | 0.998544 |
Target: 5'- cGACCCAG--GGCAUCGCcaaggCCGAGc- -3' miRNA: 3'- cCUGGGUUugCUGUAGCGa----GGUUUuc -5' |
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9703 | 3' | -48.4 | NC_002577.1 | + | 4375 | 0.71 | 0.976864 |
Target: 5'- cGACCCccGAACGAUgcaCGCUcCCAAGAGu -3' miRNA: 3'- cCUGGG--UUUGCUGua-GCGA-GGUUUUC- -5' |
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9703 | 3' | -48.4 | NC_002577.1 | + | 7597 | 0.69 | 0.99517 |
Target: 5'- gGGAUCCGAaccguGCGGCGggaagGCUCCGAGu- -3' miRNA: 3'- -CCUGGGUU-----UGCUGUag---CGAGGUUUuc -5' |
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9703 | 3' | -48.4 | NC_002577.1 | + | 136132 | 0.67 | 0.998799 |
Target: 5'- cGGcccGCCCAGGCGGCG-CuCUCCGGuAGg -3' miRNA: 3'- -CC---UGGGUUUGCUGUaGcGAGGUUuUC- -5' |
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9703 | 3' | -48.4 | NC_002577.1 | + | 136713 | 0.67 | 0.998799 |
Target: 5'- aGGCCCGGcgucGCG-CA-CGCUUCAGGGGg -3' miRNA: 3'- cCUGGGUU----UGCuGUaGCGAGGUUUUC- -5' |
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9703 | 3' | -48.4 | NC_002577.1 | + | 49484 | 0.71 | 0.979289 |
Target: 5'- uGGAUCCuauaGACGUUGCUCUAcAGGa -3' miRNA: 3'- -CCUGGGuuugCUGUAGCGAGGUuUUC- -5' |
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9703 | 3' | -48.4 | NC_002577.1 | + | 58354 | 0.69 | 0.993478 |
Target: 5'- -cGCgCUAAACGGCAUCGUccUCCGAAu- -3' miRNA: 3'- ccUG-GGUUUGCUGUAGCG--AGGUUUuc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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