miRNA display CGI


Results 21 - 40 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9703 3' -48.4 NC_002577.1 + 135398 0.68 0.997897
Target:  5'- cGGGCCaaUAAACuGcACGUCGCUUCGGGAa -3'
miRNA:   3'- -CCUGG--GUUUG-C-UGUAGCGAGGUUUUc -5'
9703 3' -48.4 NC_002577.1 + 41517 0.66 0.999474
Target:  5'- -uGCCCAcgcgucggacGCGACGuUCGCUCCuauAAGAGg -3'
miRNA:   3'- ccUGGGUu---------UGCUGU-AGCGAGG---UUUUC- -5'
9703 3' -48.4 NC_002577.1 + 153473 0.67 0.998799
Target:  5'- -cGCCCGGugGGCAcaagCGCUUgCGGGAGg -3'
miRNA:   3'- ccUGGGUUugCUGUa---GCGAG-GUUUUC- -5'
9703 3' -48.4 NC_002577.1 + 66875 0.68 0.997897
Target:  5'- cGGuuguUUCGAACGACGUgGCUaCCGGGGGc -3'
miRNA:   3'- -CCu---GGGUUUGCUGUAgCGA-GGUUUUC- -5'
9703 3' -48.4 NC_002577.1 + 162323 0.66 0.999735
Target:  5'- aGGAagaCCGcgcGGCGACAgCGC-CUAGAAGa -3'
miRNA:   3'- -CCUg--GGU---UUGCUGUaGCGaGGUUUUC- -5'
9703 3' -48.4 NC_002577.1 + 136335 0.69 0.995871
Target:  5'- -cAUCCAAGCGguGCG-CGCUCUGAGAGa -3'
miRNA:   3'- ccUGGGUUUGC--UGUaGCGAGGUUUUC- -5'
9703 3' -48.4 NC_002577.1 + 7597 0.69 0.99517
Target:  5'- gGGAUCCGAaccguGCGGCGggaagGCUCCGAGu- -3'
miRNA:   3'- -CCUGGGUU-----UGCUGUag---CGAGGUUUuc -5'
9703 3' -48.4 NC_002577.1 + 61044 0.67 0.999196
Target:  5'- aGGGCCCAAAaCGuaACGUCGCg--GGAAGc -3'
miRNA:   3'- -CCUGGGUUU-GC--UGUAGCGaggUUUUC- -5'
9703 3' -48.4 NC_002577.1 + 157067 0.74 0.924529
Target:  5'- cGGGCUgGGACucgGUCGCUCCGGAGGg -3'
miRNA:   3'- -CCUGGgUUUGcugUAGCGAGGUUUUC- -5'
9703 3' -48.4 NC_002577.1 + 5875 0.73 0.935314
Target:  5'- gGGGCCCuGGCGAgAUCGgCUCUGAAu- -3'
miRNA:   3'- -CCUGGGuUUGCUgUAGC-GAGGUUUuc -5'
9703 3' -48.4 NC_002577.1 + 162734 0.67 0.998246
Target:  5'- uGGACUCAGAUcGCcgCGUccuuUCCGAAGGc -3'
miRNA:   3'- -CCUGGGUUUGcUGuaGCG----AGGUUUUC- -5'
9703 3' -48.4 NC_002577.1 + 160227 0.67 0.998544
Target:  5'- cGACCCAG--GGCAUCGCcaaggCCGAGc- -3'
miRNA:   3'- cCUGGGUUugCUGUAGCGa----GGUUUuc -5'
9703 3' -48.4 NC_002577.1 + 103327 0.67 0.998544
Target:  5'- aGACCCGcccGACGGCAUUGCgacagcgauUCguGGAGa -3'
miRNA:   3'- cCUGGGU---UUGCUGUAGCG---------AGguUUUC- -5'
9703 3' -48.4 NC_002577.1 + 161206 0.67 0.998799
Target:  5'- cGGcccGCCCAGGCGGCG-CuCUCCGGuAGg -3'
miRNA:   3'- -CC---UGGGUUUGCUGUaGcGAGGUUuUC- -5'
9703 3' -48.4 NC_002577.1 + 15899 0.66 0.999474
Target:  5'- cGACCUuGGCGACAUaucCGCUCgAGuGGu -3'
miRNA:   3'- cCUGGGuUUGCUGUA---GCGAGgUUuUC- -5'
9703 3' -48.4 NC_002577.1 + 99733 0.7 0.988686
Target:  5'- gGGACCCccucgucGAUGGCGUCGCgUCGAAGu -3'
miRNA:   3'- -CCUGGGu------UUGCUGUAGCGaGGUUUUc -5'
9703 3' -48.4 NC_002577.1 + 61931 0.71 0.982972
Target:  5'- aGACUCAuacACGACAUuauucaauggguucCGCUCCAGGAa -3'
miRNA:   3'- cCUGGGUu--UGCUGUA--------------GCGAGGUUUUc -5'
9703 3' -48.4 NC_002577.1 + 139913 0.71 0.981521
Target:  5'- cGACCCuGGACGAUauGUCGCcgUCCGAGGa -3'
miRNA:   3'- cCUGGG-UUUGCUG--UAGCG--AGGUUUUc -5'
9703 3' -48.4 NC_002577.1 + 129239 0.71 0.976864
Target:  5'- cGACCCccGAACGAUgcaCGCUcCCAAGAGu -3'
miRNA:   3'- cCUGGG--UUUGCUGua-GCGA-GGUUUUC- -5'
9703 3' -48.4 NC_002577.1 + 57478 0.72 0.971397
Target:  5'- aGGaACCCAAAUGAaAUCGUcgCCGGGGGg -3'
miRNA:   3'- -CC-UGGGUUUGCUgUAGCGa-GGUUUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.