miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9703 3' -48.4 NC_002577.1 + 123058 0.69 0.994375
Target:  5'- cGACCC--GCGACcgUGUUCCGcGAGc -3'
miRNA:   3'- cCUGGGuuUGCUGuaGCGAGGUuUUC- -5'
9703 3' -48.4 NC_002577.1 + 103327 0.67 0.998544
Target:  5'- aGACCCGcccGACGGCAUUGCgacagcgauUCguGGAGa -3'
miRNA:   3'- cCUGGGU---UUGCUGUAGCG---------AGguUUUC- -5'
9703 3' -48.4 NC_002577.1 + 160227 0.67 0.998544
Target:  5'- cGACCCAG--GGCAUCGCcaaggCCGAGc- -3'
miRNA:   3'- cCUGGGUUugCUGUAGCGa----GGUUUuc -5'
9703 3' -48.4 NC_002577.1 + 162734 0.67 0.998246
Target:  5'- uGGACUCAGAUcGCcgCGUccuuUCCGAAGGc -3'
miRNA:   3'- -CCUGGGUUUGcUGuaGCG----AGGUUUUC- -5'
9703 3' -48.4 NC_002577.1 + 161940 0.68 0.997897
Target:  5'- cGGGCCaaUAAACuGcACGUCGCUUCGGGAa -3'
miRNA:   3'- -CCUGG--GUUUG-C-UGUAGCGAGGUUUUc -5'
9703 3' -48.4 NC_002577.1 + 161003 0.69 0.995871
Target:  5'- -cAUCCAAGCGguGCG-CGCUCUGAGAGa -3'
miRNA:   3'- ccUGGGUUUGC--UGUaGCGAGGUUUUC- -5'
9703 3' -48.4 NC_002577.1 + 135664 0.69 0.995871
Target:  5'- aGGACCgucuGCGACGUuugcCGCUCCGu--- -3'
miRNA:   3'- -CCUGGguu-UGCUGUA----GCGAGGUuuuc -5'
9703 3' -48.4 NC_002577.1 + 104993 0.69 0.995805
Target:  5'- aGGCUCGAAUGGCucugaagGUCGCcaucgaUCCAGAAGa -3'
miRNA:   3'- cCUGGGUUUGCUG-------UAGCG------AGGUUUUC- -5'
9703 3' -48.4 NC_002577.1 + 126017 0.69 0.99517
Target:  5'- gGGAUCCGAaccguGCGGCGggaagGCUCCGAGu- -3'
miRNA:   3'- -CCUGGGUU-----UGCUGUag---CGAGGUUUuc -5'
9703 3' -48.4 NC_002577.1 + 161206 0.67 0.998799
Target:  5'- cGGcccGCCCAGGCGGCG-CuCUCCGGuAGg -3'
miRNA:   3'- -CC---UGGGUUUGCUGUaGcGAGGUUuUC- -5'
9703 3' -48.4 NC_002577.1 + 132457 0.67 0.998799
Target:  5'- cGGACCgCAGcCuuuGCGUCGCcgCCGGGAGa -3'
miRNA:   3'- -CCUGG-GUUuGc--UGUAGCGa-GGUUUUC- -5'
9703 3' -48.4 NC_002577.1 + 59608 0.67 0.999014
Target:  5'- -aACCCGAGCGcCAUCGCgagcgcuaCCuuAGGg -3'
miRNA:   3'- ccUGGGUUUGCuGUAGCGa-------GGuuUUC- -5'
9703 3' -48.4 NC_002577.1 + 77900 0.66 0.999735
Target:  5'- gGGGCaCGGAuCGugAUCGCcgcagaaugUCCAGAAGc -3'
miRNA:   3'- -CCUGgGUUU-GCugUAGCG---------AGGUUUUC- -5'
9703 3' -48.4 NC_002577.1 + 98949 0.66 0.999735
Target:  5'- uGugCCGAugGGC-UUG-UCCAAAAGg -3'
miRNA:   3'- cCugGGUUugCUGuAGCgAGGUUUUC- -5'
9703 3' -48.4 NC_002577.1 + 158034 0.66 0.999579
Target:  5'- gGGAUUCAGaggGCGGCGUucCGUUCCAGu-- -3'
miRNA:   3'- -CCUGGGUU---UGCUGUA--GCGAGGUUuuc -5'
9703 3' -48.4 NC_002577.1 + 28943 0.66 0.999579
Target:  5'- cGGGCCCGAugGAgggcuggguacCGUCGCaauaacggCCGAu-- -3'
miRNA:   3'- -CCUGGGUUugCU-----------GUAGCGa-------GGUUuuc -5'
9703 3' -48.4 NC_002577.1 + 15899 0.66 0.999474
Target:  5'- cGACCUuGGCGACAUaucCGCUCgAGuGGu -3'
miRNA:   3'- cCUGGGuUUGCUGUA---GCGAGgUUuUC- -5'
9703 3' -48.4 NC_002577.1 + 61044 0.67 0.999196
Target:  5'- aGGGCCCAAAaCGuaACGUCGCg--GGAAGc -3'
miRNA:   3'- -CCUGGGUUU-GC--UGUAGCGaggUUUUC- -5'
9703 3' -48.4 NC_002577.1 + 109975 0.67 0.999014
Target:  5'- aGACUgcuaUGAAUGAUAUCGCUCUAGuGGa -3'
miRNA:   3'- cCUGG----GUUUGCUGUAGCGAGGUUuUC- -5'
9703 3' -48.4 NC_002577.1 + 4820 0.67 0.999014
Target:  5'- aGGACCgAGGCGGC---GUUCCAAAc- -3'
miRNA:   3'- -CCUGGgUUUGCUGuagCGAGGUUUuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.