miRNA display CGI


Results 1 - 20 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9708 5' -57.5 NC_002577.1 + 11435 1.1 0.001983
Target:  5'- cCCCCUUCCCUUCCCCCACACAUCCUCc -3'
miRNA:   3'- -GGGGAAGGGAAGGGGGUGUGUAGGAG- -5'
9708 5' -57.5 NC_002577.1 + 122179 1.1 0.001983
Target:  5'- cCCCCUUCCCUUCCCCCACACAUCCUCc -3'
miRNA:   3'- -GGGGAAGGGAAGGGGGUGUGUAGGAG- -5'
9708 5' -57.5 NC_002577.1 + 7564 0.81 0.163142
Target:  5'- cCCCCgcguaaacaauuaUCCC-UCCCCCGCGCGUCCUa -3'
miRNA:   3'- -GGGGa------------AGGGaAGGGGGUGUGUAGGAg -5'
9708 5' -57.5 NC_002577.1 + 126050 0.81 0.163142
Target:  5'- cCCCCgcguaaacaauuaUCCC-UCCCCCGCGCGUCCUa -3'
miRNA:   3'- -GGGGa------------AGGGaAGGGGGUGUGUAGGAg -5'
9708 5' -57.5 NC_002577.1 + 140696 0.76 0.350525
Target:  5'- cCCCCUccgcacgguUCCCcUCCCCC-CACG-CCUCu -3'
miRNA:   3'- -GGGGA---------AGGGaAGGGGGuGUGUaGGAG- -5'
9708 5' -57.5 NC_002577.1 + 156642 0.76 0.350525
Target:  5'- cCCCCUccgcacgguUCCCcUCCCCC-CACG-CCUCu -3'
miRNA:   3'- -GGGGA---------AGGGaAGGGGGuGUGUaGGAG- -5'
9708 5' -57.5 NC_002577.1 + 142553 0.76 0.358242
Target:  5'- gCCCC--CCCU-CCCCCACGCAgcgCCUa -3'
miRNA:   3'- -GGGGaaGGGAaGGGGGUGUGUa--GGAg -5'
9708 5' -57.5 NC_002577.1 + 154783 0.76 0.358242
Target:  5'- gCCCC--CCCU-CCCCCACGCAgcgCCUa -3'
miRNA:   3'- -GGGGaaGGGAaGGGGGUGUGUa--GGAg -5'
9708 5' -57.5 NC_002577.1 + 5969 0.75 0.40699
Target:  5'- cCCCCcUCCCUUCCCCC-C-C-UCCUUc -3'
miRNA:   3'- -GGGGaAGGGAAGGGGGuGuGuAGGAG- -5'
9708 5' -57.5 NC_002577.1 + 3689 0.74 0.424138
Target:  5'- aUCCUUCCCgccccccccCCCCCACAUAggaaCCUCu -3'
miRNA:   3'- gGGGAAGGGaa-------GGGGGUGUGUa---GGAG- -5'
9708 5' -57.5 NC_002577.1 + 129925 0.74 0.424138
Target:  5'- aUCCUUCCCgccccccccCCCCCACAUAggaaCCUCu -3'
miRNA:   3'- gGGGAAGGGaa-------GGGGGUGUGUa---GGAG- -5'
9708 5' -57.5 NC_002577.1 + 7628 0.74 0.43905
Target:  5'- cCCCCUUCCaaggccuaacccccCCCCCGCGCuUUCUCg -3'
miRNA:   3'- -GGGGAAGGgaa-----------GGGGGUGUGuAGGAG- -5'
9708 5' -57.5 NC_002577.1 + 125985 0.74 0.43905
Target:  5'- cCCCCUUCCaaggccuaacccccCCCCCGCGCuUUCUCg -3'
miRNA:   3'- -GGGGAAGGgaa-----------GGGGGUGUGuAGGAG- -5'
9708 5' -57.5 NC_002577.1 + 127731 0.72 0.535127
Target:  5'- cCCCCUcccuucuuccUCCCUUCCCCCcCcCuccCCUCu -3'
miRNA:   3'- -GGGGA----------AGGGAAGGGGGuGuGua-GGAG- -5'
9708 5' -57.5 NC_002577.1 + 5883 0.72 0.535127
Target:  5'- cCCCCUcccuucuuccUCCCUUCCCCCcCcCuccCCUCu -3'
miRNA:   3'- -GGGGA----------AGGGAAGGGGGuGuGua-GGAG- -5'
9708 5' -57.5 NC_002577.1 + 95435 0.72 0.544885
Target:  5'- gCUCCUUCgauauaagCUUUCCCCCuCACAUCCg- -3'
miRNA:   3'- -GGGGAAG--------GGAAGGGGGuGUGUAGGag -5'
9708 5' -57.5 NC_002577.1 + 16326 0.72 0.544885
Target:  5'- cCCCCcgCCCUcaucuucgaacUCCCCCAUcaucaccauCGUCCUCc -3'
miRNA:   3'- -GGGGaaGGGA-----------AGGGGGUGu--------GUAGGAG- -5'
9708 5' -57.5 NC_002577.1 + 127619 0.71 0.58443
Target:  5'- cCCCCcUCCCUUCCCCC-Cu--UCCc- -3'
miRNA:   3'- -GGGGaAGGGAAGGGGGuGuguAGGag -5'
9708 5' -57.5 NC_002577.1 + 127479 0.71 0.58443
Target:  5'- cCCCCcUCCCUUCUCCCcccuccguucAgACuUCCUCc -3'
miRNA:   3'- -GGGGaAGGGAAGGGGG----------UgUGuAGGAG- -5'
9708 5' -57.5 NC_002577.1 + 5994 0.71 0.58443
Target:  5'- cCCCCcUCCCUUCCCCC-Cu--UCCc- -3'
miRNA:   3'- -GGGGaAGGGAAGGGGGuGuguAGGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.