miRNA display CGI


Results 21 - 40 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9708 5' -57.5 NC_002577.1 + 6134 0.71 0.58443
Target:  5'- cCCCCcUCCCUUCUCCCcccuccguucAgACuUCCUCc -3'
miRNA:   3'- -GGGGaAGGGAAGGGGG----------UgUGuAGGAG- -5'
9708 5' -57.5 NC_002577.1 + 5943 0.71 0.594414
Target:  5'- cCCCCcUCCCUUCCCCCcCuc--CCUUc -3'
miRNA:   3'- -GGGGaAGGGAAGGGGGuGuguaGGAG- -5'
9708 5' -57.5 NC_002577.1 + 127645 0.71 0.594414
Target:  5'- cCCCCcUCCCUUCCCCCcCuc--CCUUc -3'
miRNA:   3'- -GGGGaAGGGAAGGGGGuGuguaGGAG- -5'
9708 5' -57.5 NC_002577.1 + 127671 0.71 0.594414
Target:  5'- cCCCCcUCCCUUCCCCCcCuc--CCUUc -3'
miRNA:   3'- -GGGGaAGGGAAGGGGGuGuguaGGAG- -5'
9708 5' -57.5 NC_002577.1 + 126459 0.71 0.614456
Target:  5'- cCCCCcUCCCc-CCCCCAUACAUgaaagaCCUa -3'
miRNA:   3'- -GGGGaAGGGaaGGGGGUGUGUA------GGAg -5'
9708 5' -57.5 NC_002577.1 + 7154 0.71 0.614456
Target:  5'- cCCCCcUCCCc-CCCCCAUACAUgaaagaCCUa -3'
miRNA:   3'- -GGGGaAGGGaaGGGGGUGUGUA------GGAg -5'
9708 5' -57.5 NC_002577.1 + 5340 0.71 0.623495
Target:  5'- gUCCUUCCCgggUCCCCUAgagguguCACGUUCUa -3'
miRNA:   3'- gGGGAAGGGa--AGGGGGU-------GUGUAGGAg -5'
9708 5' -57.5 NC_002577.1 + 128274 0.71 0.623495
Target:  5'- gUCCUUCCCgggUCCCCUAgagguguCACGUUCUa -3'
miRNA:   3'- gGGGAAGGGa--AGGGGGU-------GUGUAGGAg -5'
9708 5' -57.5 NC_002577.1 + 26496 0.7 0.634549
Target:  5'- gCCCCgUCCgUgaaugUCCCCCACAgucCAUCUUUg -3'
miRNA:   3'- -GGGGaAGGgA-----AGGGGGUGU---GUAGGAG- -5'
9708 5' -57.5 NC_002577.1 + 124704 0.7 0.644597
Target:  5'- gCCCgucgCCCcccCCCUCGCACAUCC-Cg -3'
miRNA:   3'- gGGGaa--GGGaa-GGGGGUGUGUAGGaG- -5'
9708 5' -57.5 NC_002577.1 + 8910 0.7 0.644597
Target:  5'- gCCCgucgCCCcccCCCUCGCACAUCC-Cg -3'
miRNA:   3'- gGGGaa--GGGaa-GGGGGUGUGUAGGaG- -5'
9708 5' -57.5 NC_002577.1 + 142603 0.7 0.674651
Target:  5'- uUCUgUUcCCCUUCCCCCACACAc---- -3'
miRNA:   3'- -GGGgAA-GGGAAGGGGGUGUGUaggag -5'
9708 5' -57.5 NC_002577.1 + 54433 0.69 0.694533
Target:  5'- aCCUCUUCCgaucgaucgUCUCgCCGCGCGUUCUCa -3'
miRNA:   3'- -GGGGAAGGga-------AGGG-GGUGUGUAGGAG- -5'
9708 5' -57.5 NC_002577.1 + 72332 0.69 0.694533
Target:  5'- uUCUC-UCCUgcgUCCCCCACGCcUCCa- -3'
miRNA:   3'- -GGGGaAGGGa--AGGGGGUGUGuAGGag -5'
9708 5' -57.5 NC_002577.1 + 9261 0.68 0.752696
Target:  5'- gCCCUcUgCgUUUCCCCGCACGgcCCUCg -3'
miRNA:   3'- gGGGA-AgGgAAGGGGGUGUGUa-GGAG- -5'
9708 5' -57.5 NC_002577.1 + 138703 0.68 0.752696
Target:  5'- aCCCgcgCUUCCCaUCCCCUACcCcggCCUCc -3'
miRNA:   3'- -GGG---GAAGGGaAGGGGGUGuGua-GGAG- -5'
9708 5' -57.5 NC_002577.1 + 158635 0.68 0.752696
Target:  5'- aCCCgcgCUUCCCaUCCCCUACcCcggCCUCc -3'
miRNA:   3'- -GGG---GAAGGGaAGGGGGUGuGua-GGAG- -5'
9708 5' -57.5 NC_002577.1 + 156572 0.68 0.762083
Target:  5'- cCCCCUUagcccCCCUcCUCCUACGCcaCCUCc -3'
miRNA:   3'- -GGGGAA-----GGGAaGGGGGUGUGuaGGAG- -5'
9708 5' -57.5 NC_002577.1 + 140766 0.68 0.762083
Target:  5'- cCCCCUUagcccCCCUcCUCCUACGCcaCCUCc -3'
miRNA:   3'- -GGGGAA-----GGGAaGGGGGUGUGuaGGAG- -5'
9708 5' -57.5 NC_002577.1 + 158132 0.68 0.771358
Target:  5'- -gCCUUCCCggccUUCCaCCCAC-CGaaucUCCUCg -3'
miRNA:   3'- ggGGAAGGG----AAGG-GGGUGuGU----AGGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.