miRNA display CGI


Results 41 - 60 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9708 5' -57.5 NC_002577.1 + 139206 0.68 0.771358
Target:  5'- -gCCUUCCCggccUUCCaCCCAC-CGaaucUCCUCg -3'
miRNA:   3'- ggGGAAGGG----AAGG-GGGUGuGU----AGGAG- -5'
9708 5' -57.5 NC_002577.1 + 140654 0.68 0.780514
Target:  5'- -aCCUcCCCUcCCUCUACGCAgacaUCCUCc -3'
miRNA:   3'- ggGGAaGGGAaGGGGGUGUGU----AGGAG- -5'
9708 5' -57.5 NC_002577.1 + 156602 0.68 0.789541
Target:  5'- nCCCCUUagcccCCCUcCUCCUACGCcaCCUCc -3'
miRNA:   3'- -GGGGAA-----GGGAaGGGGGUGUGuaGGAG- -5'
9708 5' -57.5 NC_002577.1 + 6095 0.68 0.789541
Target:  5'- cCCCCcUCCCUUCUCCC-C-CcUCCg- -3'
miRNA:   3'- -GGGGaAGGGAAGGGGGuGuGuAGGag -5'
9708 5' -57.5 NC_002577.1 + 140736 0.68 0.789541
Target:  5'- nCCCCUUagcccCCCUcCUCCUACGCcaCCUCc -3'
miRNA:   3'- -GGGGAA-----GGGAaGGGGGUGUGuaGGAG- -5'
9708 5' -57.5 NC_002577.1 + 127518 0.68 0.789541
Target:  5'- cCCCCcUCCCUUCUCCC-C-CcUCCg- -3'
miRNA:   3'- -GGGGaAGGGAAGGGGGuGuGuAGGag -5'
9708 5' -57.5 NC_002577.1 + 6051 0.68 0.798432
Target:  5'- cUCCCUUcuuccCCCUUCUCCCAC-C-UCCg- -3'
miRNA:   3'- -GGGGAA-----GGGAAGGGGGUGuGuAGGag -5'
9708 5' -57.5 NC_002577.1 + 127562 0.68 0.798432
Target:  5'- cUCCCUUcuuccCCCUUCUCCCAC-C-UCCg- -3'
miRNA:   3'- -GGGGAA-----GGGAAGGGGGUGuGuAGGag -5'
9708 5' -57.5 NC_002577.1 + 121720 0.68 0.798432
Target:  5'- cCCCCUccgUCCCcggcuccgCUCUCGCgcuccGCAUCCUCu -3'
miRNA:   3'- -GGGGA---AGGGaa------GGGGGUG-----UGUAGGAG- -5'
9708 5' -57.5 NC_002577.1 + 124352 0.67 0.81577
Target:  5'- gCCUCUg-CgUUUCCCCGCACGgcCCUCg -3'
miRNA:   3'- -GGGGAagGgAAGGGGGUGUGUa-GGAG- -5'
9708 5' -57.5 NC_002577.1 + 156685 0.67 0.81577
Target:  5'- cCCCCcUCCCUcuaCgCAgACAUCCUCc -3'
miRNA:   3'- -GGGGaAGGGAaggGgGUgUGUAGGAG- -5'
9708 5' -57.5 NC_002577.1 + 106917 0.67 0.81577
Target:  5'- uCCCCggUCCCaUUCUCCGCGucgcCAUCCa- -3'
miRNA:   3'- -GGGGa-AGGGaAGGGGGUGU----GUAGGag -5'
9708 5' -57.5 NC_002577.1 + 157515 0.67 0.82169
Target:  5'- uCCCCcUCCCcgCCCCgauagugcugccaaCGCGCAUCUg- -3'
miRNA:   3'- -GGGGaAGGGaaGGGG--------------GUGUGUAGGag -5'
9708 5' -57.5 NC_002577.1 + 139823 0.67 0.82169
Target:  5'- uCCCCcUCCCcgCCCCgauagugcugccaaCGCGCAUCUg- -3'
miRNA:   3'- -GGGGaAGGGaaGGGG--------------GUGUGUAGGag -5'
9708 5' -57.5 NC_002577.1 + 154056 0.67 0.827528
Target:  5'- cCCCCUcaUCCCUacuaaUCCCgaaugccuuuaaugaUCACGCAauaaccccUCCUCu -3'
miRNA:   3'- -GGGGA--AGGGA-----AGGG---------------GGUGUGU--------AGGAG- -5'
9708 5' -57.5 NC_002577.1 + 15510 0.67 0.832466
Target:  5'- aCCCCaggUCCCagaCUCCCGaa-AUCCUCa -3'
miRNA:   3'- -GGGGa--AGGGaa-GGGGGUgugUAGGAG- -5'
9708 5' -57.5 NC_002577.1 + 127599 0.67 0.832466
Target:  5'- nCCCCUUCCCcucUUCUCCCcC-CccCCUCc -3'
miRNA:   3'- -GGGGAAGGG---AAGGGGGuGuGuaGGAG- -5'
9708 5' -57.5 NC_002577.1 + 122058 0.67 0.832466
Target:  5'- cCUCCUUCCCccccUCCCCCuucuucuCcCGUCCg- -3'
miRNA:   3'- -GGGGAAGGGa---AGGGGGu------GuGUAGGag -5'
9708 5' -57.5 NC_002577.1 + 123623 0.67 0.832466
Target:  5'- -gCCgUCCCcUCCCCCAUuucguuCcgCCUCg -3'
miRNA:   3'- ggGGaAGGGaAGGGGGUGu-----GuaGGAG- -5'
9708 5' -57.5 NC_002577.1 + 11556 0.67 0.832466
Target:  5'- cCUCCUUCCCccccUCCCCCuucuucuCcCGUCCg- -3'
miRNA:   3'- -GGGGAAGGGa---AGGGGGu------GuGUAGGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.