miRNA display CGI


Results 1 - 20 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9708 5' -57.5 NC_002577.1 + 3596 0.66 0.863695
Target:  5'- gCCC-UCUCUcgCCCCUcCGCGUCCg- -3'
miRNA:   3'- gGGGaAGGGAa-GGGGGuGUGUAGGag -5'
9708 5' -57.5 NC_002577.1 + 3689 0.74 0.424138
Target:  5'- aUCCUUCCCgccccccccCCCCCACAUAggaaCCUCu -3'
miRNA:   3'- gGGGAAGGGaa-------GGGGGUGUGUa---GGAG- -5'
9708 5' -57.5 NC_002577.1 + 5340 0.71 0.623495
Target:  5'- gUCCUUCCCgggUCCCCUAgagguguCACGUUCUa -3'
miRNA:   3'- gGGGAAGGGa--AGGGGGU-------GUGUAGGAg -5'
9708 5' -57.5 NC_002577.1 + 5717 0.66 0.871014
Target:  5'- cCCCCcUCCCUucuUCCCCC-CucccuUCUUCc -3'
miRNA:   3'- -GGGGaAGGGA---AGGGGGuGugu--AGGAG- -5'
9708 5' -57.5 NC_002577.1 + 5747 0.66 0.871014
Target:  5'- cCCCCcUCCCUucuUCCCCC-CucccuUCUUCc -3'
miRNA:   3'- -GGGGaAGGGA---AGGGGGuGugu--AGGAG- -5'
9708 5' -57.5 NC_002577.1 + 5777 0.66 0.871014
Target:  5'- cCCCCcUCCCUucuUCCCCC-CucccuUCUUCc -3'
miRNA:   3'- -GGGGaAGGGA---AGGGGGuGugu--AGGAG- -5'
9708 5' -57.5 NC_002577.1 + 5807 0.66 0.871014
Target:  5'- cCCCCcUCCCUucuUCCCCC-CucccuUCUUCc -3'
miRNA:   3'- -GGGGaAGGGA---AGGGGGuGugu--AGGAG- -5'
9708 5' -57.5 NC_002577.1 + 5837 0.66 0.871014
Target:  5'- cCCCCcUCCCUucuUCCCCC-CucccuUCUUCc -3'
miRNA:   3'- -GGGGaAGGGA---AGGGGGuGugu--AGGAG- -5'
9708 5' -57.5 NC_002577.1 + 5883 0.72 0.535127
Target:  5'- cCCCCUcccuucuuccUCCCUUCCCCCcCcCuccCCUCu -3'
miRNA:   3'- -GGGGA----------AGGGAAGGGGGuGuGua-GGAG- -5'
9708 5' -57.5 NC_002577.1 + 5943 0.71 0.594414
Target:  5'- cCCCCcUCCCUUCCCCCcCuc--CCUUc -3'
miRNA:   3'- -GGGGaAGGGAAGGGGGuGuguaGGAG- -5'
9708 5' -57.5 NC_002577.1 + 5969 0.75 0.40699
Target:  5'- cCCCCcUCCCUUCCCCC-C-C-UCCUUc -3'
miRNA:   3'- -GGGGaAGGGAAGGGGGuGuGuAGGAG- -5'
9708 5' -57.5 NC_002577.1 + 5994 0.71 0.58443
Target:  5'- cCCCCcUCCCUUCCCCC-Cu--UCCc- -3'
miRNA:   3'- -GGGGaAGGGAAGGGGGuGuguAGGag -5'
9708 5' -57.5 NC_002577.1 + 6014 0.67 0.832466
Target:  5'- nCCCCUUCCCcucUUCUCCCcC-CccCCUCc -3'
miRNA:   3'- -GGGGAAGGG---AAGGGGGuGuGuaGGAG- -5'
9708 5' -57.5 NC_002577.1 + 6051 0.68 0.798432
Target:  5'- cUCCCUUcuuccCCCUUCUCCCAC-C-UCCg- -3'
miRNA:   3'- -GGGGAA-----GGGAAGGGGGUGuGuAGGag -5'
9708 5' -57.5 NC_002577.1 + 6095 0.68 0.789541
Target:  5'- cCCCCcUCCCUUCUCCC-C-CcUCCg- -3'
miRNA:   3'- -GGGGaAGGGAAGGGGGuGuGuAGGag -5'
9708 5' -57.5 NC_002577.1 + 6134 0.71 0.58443
Target:  5'- cCCCCcUCCCUUCUCCCcccuccguucAgACuUCCUCc -3'
miRNA:   3'- -GGGGaAGGGAAGGGGG----------UgUGuAGGAG- -5'
9708 5' -57.5 NC_002577.1 + 7154 0.71 0.614456
Target:  5'- cCCCCcUCCCc-CCCCCAUACAUgaaagaCCUa -3'
miRNA:   3'- -GGGGaAGGGaaGGGGGUGUGUA------GGAg -5'
9708 5' -57.5 NC_002577.1 + 7564 0.81 0.163142
Target:  5'- cCCCCgcguaaacaauuaUCCC-UCCCCCGCGCGUCCUa -3'
miRNA:   3'- -GGGGa------------AGGGaAGGGGGUGUGUAGGAg -5'
9708 5' -57.5 NC_002577.1 + 7628 0.74 0.43905
Target:  5'- cCCCCUUCCaaggccuaacccccCCCCCGCGCuUUCUCg -3'
miRNA:   3'- -GGGGAAGGgaa-----------GGGGGUGUGuAGGAG- -5'
9708 5' -57.5 NC_002577.1 + 8312 0.67 0.840553
Target:  5'- aCCCCccCCCccCCCCCGC-CAUCgaCa -3'
miRNA:   3'- -GGGGaaGGGaaGGGGGUGuGUAGgaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.