miRNA display CGI


Results 41 - 60 of 81 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9708 5' -57.5 NC_002577.1 + 124863 0.66 0.873884
Target:  5'- gCUCCUcCCCgucgcgaaacuguaUCCCCCGCACAaacaCCUg -3'
miRNA:   3'- -GGGGAaGGGa-------------AGGGGGUGUGUa---GGAg -5'
9708 5' -57.5 NC_002577.1 + 125302 0.67 0.840553
Target:  5'- aCCCCccCCCccCCCCCGC-CAUCgaCa -3'
miRNA:   3'- -GGGGaaGGGaaGGGGGUGuGUAGgaG- -5'
9708 5' -57.5 NC_002577.1 + 125985 0.74 0.43905
Target:  5'- cCCCCUUCCaaggccuaacccccCCCCCGCGCuUUCUCg -3'
miRNA:   3'- -GGGGAAGGgaa-----------GGGGGUGUGuAGGAG- -5'
9708 5' -57.5 NC_002577.1 + 126050 0.81 0.163142
Target:  5'- cCCCCgcguaaacaauuaUCCC-UCCCCCGCGCGUCCUa -3'
miRNA:   3'- -GGGGa------------AGGGaAGGGGGUGUGUAGGAg -5'
9708 5' -57.5 NC_002577.1 + 126459 0.71 0.614456
Target:  5'- cCCCCcUCCCc-CCCCCAUACAUgaaagaCCUa -3'
miRNA:   3'- -GGGGaAGGGaaGGGGGUGUGUA------GGAg -5'
9708 5' -57.5 NC_002577.1 + 127479 0.71 0.58443
Target:  5'- cCCCCcUCCCUUCUCCCcccuccguucAgACuUCCUCc -3'
miRNA:   3'- -GGGGaAGGGAAGGGGG----------UgUGuAGGAG- -5'
9708 5' -57.5 NC_002577.1 + 127518 0.68 0.789541
Target:  5'- cCCCCcUCCCUUCUCCC-C-CcUCCg- -3'
miRNA:   3'- -GGGGaAGGGAAGGGGGuGuGuAGGag -5'
9708 5' -57.5 NC_002577.1 + 127562 0.68 0.798432
Target:  5'- cUCCCUUcuuccCCCUUCUCCCAC-C-UCCg- -3'
miRNA:   3'- -GGGGAA-----GGGAAGGGGGUGuGuAGGag -5'
9708 5' -57.5 NC_002577.1 + 127599 0.67 0.832466
Target:  5'- nCCCCUUCCCcucUUCUCCCcC-CccCCUCc -3'
miRNA:   3'- -GGGGAAGGG---AAGGGGGuGuGuaGGAG- -5'
9708 5' -57.5 NC_002577.1 + 127619 0.71 0.58443
Target:  5'- cCCCCcUCCCUUCCCCC-Cu--UCCc- -3'
miRNA:   3'- -GGGGaAGGGAAGGGGGuGuguAGGag -5'
9708 5' -57.5 NC_002577.1 + 127645 0.71 0.594414
Target:  5'- cCCCCcUCCCUUCCCCCcCuc--CCUUc -3'
miRNA:   3'- -GGGGaAGGGAAGGGGGuGuguaGGAG- -5'
9708 5' -57.5 NC_002577.1 + 127671 0.71 0.594414
Target:  5'- cCCCCcUCCCUUCCCCCcCuc--CCUUc -3'
miRNA:   3'- -GGGGaAGGGAAGGGGGuGuguaGGAG- -5'
9708 5' -57.5 NC_002577.1 + 127731 0.72 0.535127
Target:  5'- cCCCCUcccuucuuccUCCCUUCCCCCcCcCuccCCUCu -3'
miRNA:   3'- -GGGGA----------AGGGAAGGGGGuGuGua-GGAG- -5'
9708 5' -57.5 NC_002577.1 + 127777 0.66 0.871014
Target:  5'- cCCCCcUCCCUucuUCCCCC-CucccuUCUUCc -3'
miRNA:   3'- -GGGGaAGGGA---AGGGGGuGugu--AGGAG- -5'
9708 5' -57.5 NC_002577.1 + 127807 0.66 0.871014
Target:  5'- cCCCCcUCCCUucuUCCCCC-CucccuUCUUCc -3'
miRNA:   3'- -GGGGaAGGGA---AGGGGGuGugu--AGGAG- -5'
9708 5' -57.5 NC_002577.1 + 127837 0.66 0.871014
Target:  5'- cCCCCcUCCCUucuUCCCCC-CucccuUCUUCc -3'
miRNA:   3'- -GGGGaAGGGA---AGGGGGuGugu--AGGAG- -5'
9708 5' -57.5 NC_002577.1 + 127867 0.66 0.871014
Target:  5'- cCCCCcUCCCUucuUCCCCC-CucccuUCUUCc -3'
miRNA:   3'- -GGGGaAGGGA---AGGGGGuGugu--AGGAG- -5'
9708 5' -57.5 NC_002577.1 + 127897 0.66 0.871014
Target:  5'- cCCCCcUCCCUucuUCCCCC-CucccuUCUUCc -3'
miRNA:   3'- -GGGGaAGGGA---AGGGGGuGugu--AGGAG- -5'
9708 5' -57.5 NC_002577.1 + 128274 0.71 0.623495
Target:  5'- gUCCUUCCCgggUCCCCUAgagguguCACGUUCUa -3'
miRNA:   3'- gGGGAAGGGa--AGGGGGU-------GUGUAGGAg -5'
9708 5' -57.5 NC_002577.1 + 129925 0.74 0.424138
Target:  5'- aUCCUUCCCgccccccccCCCCCACAUAggaaCCUCu -3'
miRNA:   3'- gGGGAAGGGaa-------GGGGGUGUGUa---GGAG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.