miRNA display CGI


Results 61 - 80 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9708 5' -57.5 NC_002577.1 + 130018 0.66 0.863695
Target:  5'- gCCC-UCUCUcgCCCCUcCGCGUCCg- -3'
miRNA:   3'- gGGGaAGGGAa-GGGGGuGUGUAGGag -5'
9708 5' -57.5 NC_002577.1 + 138627 0.66 0.848458
Target:  5'- cCUCCUcgUCCgCUUCCUCUuccuCGUCCUCu -3'
miRNA:   3'- -GGGGA--AGG-GAAGGGGGugu-GUAGGAG- -5'
9708 5' -57.5 NC_002577.1 + 138703 0.68 0.752696
Target:  5'- aCCCgcgCUUCCCaUCCCCUACcCcggCCUCc -3'
miRNA:   3'- -GGG---GAAGGGaAGGGGGUGuGua-GGAG- -5'
9708 5' -57.5 NC_002577.1 + 139206 0.68 0.771358
Target:  5'- -gCCUUCCCggccUUCCaCCCAC-CGaaucUCCUCg -3'
miRNA:   3'- ggGGAAGGG----AAGG-GGGUGuGU----AGGAG- -5'
9708 5' -57.5 NC_002577.1 + 139823 0.67 0.82169
Target:  5'- uCCCCcUCCCcgCCCCgauagugcugccaaCGCGCAUCUg- -3'
miRNA:   3'- -GGGGaAGGGaaGGGG--------------GUGUGUAGGag -5'
9708 5' -57.5 NC_002577.1 + 140654 0.68 0.780514
Target:  5'- -aCCUcCCCUcCCUCUACGCAgacaUCCUCc -3'
miRNA:   3'- ggGGAaGGGAaGGGGGUGUGU----AGGAG- -5'
9708 5' -57.5 NC_002577.1 + 140696 0.76 0.350525
Target:  5'- cCCCCUccgcacgguUCCCcUCCCCC-CACG-CCUCu -3'
miRNA:   3'- -GGGGA---------AGGGaAGGGGGuGUGUaGGAG- -5'
9708 5' -57.5 NC_002577.1 + 140736 0.68 0.789541
Target:  5'- nCCCCUUagcccCCCUcCUCCUACGCcaCCUCc -3'
miRNA:   3'- -GGGGAA-----GGGAaGGGGGUGUGuaGGAG- -5'
9708 5' -57.5 NC_002577.1 + 140766 0.68 0.762083
Target:  5'- cCCCCUUagcccCCCUcCUCCUACGCcaCCUCc -3'
miRNA:   3'- -GGGGAA-----GGGAaGGGGGUGUGuaGGAG- -5'
9708 5' -57.5 NC_002577.1 + 142553 0.76 0.358242
Target:  5'- gCCCC--CCCU-CCCCCACGCAgcgCCUa -3'
miRNA:   3'- -GGGGaaGGGAaGGGGGUGUGUa--GGAg -5'
9708 5' -57.5 NC_002577.1 + 142603 0.7 0.674651
Target:  5'- uUCUgUUcCCCUUCCCCCACACAc---- -3'
miRNA:   3'- -GGGgAA-GGGAAGGGGGUGUGUaggag -5'
9708 5' -57.5 NC_002577.1 + 154056 0.67 0.827528
Target:  5'- cCCCCUcaUCCCUacuaaUCCCgaaugccuuuaaugaUCACGCAauaaccccUCCUCu -3'
miRNA:   3'- -GGGGA--AGGGA-----AGGG---------------GGUGUGU--------AGGAG- -5'
9708 5' -57.5 NC_002577.1 + 154783 0.76 0.358242
Target:  5'- gCCCC--CCCU-CCCCCACGCAgcgCCUa -3'
miRNA:   3'- -GGGGaaGGGAaGGGGGUGUGUa--GGAg -5'
9708 5' -57.5 NC_002577.1 + 156572 0.68 0.762083
Target:  5'- cCCCCUUagcccCCCUcCUCCUACGCcaCCUCc -3'
miRNA:   3'- -GGGGAA-----GGGAaGGGGGUGUGuaGGAG- -5'
9708 5' -57.5 NC_002577.1 + 156602 0.68 0.789541
Target:  5'- nCCCCUUagcccCCCUcCUCCUACGCcaCCUCc -3'
miRNA:   3'- -GGGGAA-----GGGAaGGGGGUGUGuaGGAG- -5'
9708 5' -57.5 NC_002577.1 + 156642 0.76 0.350525
Target:  5'- cCCCCUccgcacgguUCCCcUCCCCC-CACG-CCUCu -3'
miRNA:   3'- -GGGGA---------AGGGaAGGGGGuGUGUaGGAG- -5'
9708 5' -57.5 NC_002577.1 + 156685 0.67 0.81577
Target:  5'- cCCCCcUCCCUcuaCgCAgACAUCCUCc -3'
miRNA:   3'- -GGGGaAGGGAaggGgGUgUGUAGGAG- -5'
9708 5' -57.5 NC_002577.1 + 157515 0.67 0.82169
Target:  5'- uCCCCcUCCCcgCCCCgauagugcugccaaCGCGCAUCUg- -3'
miRNA:   3'- -GGGGaAGGGaaGGGG--------------GUGUGUAGGag -5'
9708 5' -57.5 NC_002577.1 + 158132 0.68 0.771358
Target:  5'- -gCCUUCCCggccUUCCaCCCAC-CGaaucUCCUCg -3'
miRNA:   3'- ggGGAAGGG----AAGG-GGGUGuGU----AGGAG- -5'
9708 5' -57.5 NC_002577.1 + 158635 0.68 0.752696
Target:  5'- aCCCgcgCUUCCCaUCCCCUACcCcggCCUCc -3'
miRNA:   3'- -GGG---GAAGGGaAGGGGGUGuGua-GGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.