Results 41 - 60 of 81 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9708 | 5' | -57.5 | NC_002577.1 | + | 124863 | 0.66 | 0.873884 |
Target: 5'- gCUCCUcCCCgucgcgaaacuguaUCCCCCGCACAaacaCCUg -3' miRNA: 3'- -GGGGAaGGGa-------------AGGGGGUGUGUa---GGAg -5' |
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9708 | 5' | -57.5 | NC_002577.1 | + | 124704 | 0.7 | 0.644597 |
Target: 5'- gCCCgucgCCCcccCCCUCGCACAUCC-Cg -3' miRNA: 3'- gGGGaa--GGGaa-GGGGGUGUGUAGGaG- -5' |
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9708 | 5' | -57.5 | NC_002577.1 | + | 124352 | 0.67 | 0.81577 |
Target: 5'- gCCUCUg-CgUUUCCCCGCACGgcCCUCg -3' miRNA: 3'- -GGGGAagGgAAGGGGGUGUGUa-GGAG- -5' |
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9708 | 5' | -57.5 | NC_002577.1 | + | 123623 | 0.67 | 0.832466 |
Target: 5'- -gCCgUCCCcUCCCCCAUuucguuCcgCCUCg -3' miRNA: 3'- ggGGaAGGGaAGGGGGUGu-----GuaGGAG- -5' |
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9708 | 5' | -57.5 | NC_002577.1 | + | 122179 | 1.1 | 0.001983 |
Target: 5'- cCCCCUUCCCUUCCCCCACACAUCCUCc -3' miRNA: 3'- -GGGGAAGGGAAGGGGGUGUGUAGGAG- -5' |
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9708 | 5' | -57.5 | NC_002577.1 | + | 122058 | 0.67 | 0.832466 |
Target: 5'- cCUCCUUCCCccccUCCCCCuucuucuCcCGUCCg- -3' miRNA: 3'- -GGGGAAGGGa---AGGGGGu------GuGUAGGag -5' |
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9708 | 5' | -57.5 | NC_002577.1 | + | 121720 | 0.68 | 0.798432 |
Target: 5'- cCCCCUccgUCCCcggcuccgCUCUCGCgcuccGCAUCCUCu -3' miRNA: 3'- -GGGGA---AGGGaa------GGGGGUG-----UGUAGGAG- -5' |
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9708 | 5' | -57.5 | NC_002577.1 | + | 106917 | 0.67 | 0.81577 |
Target: 5'- uCCCCggUCCCaUUCUCCGCGucgcCAUCCa- -3' miRNA: 3'- -GGGGa-AGGGaAGGGGGUGU----GUAGGag -5' |
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9708 | 5' | -57.5 | NC_002577.1 | + | 95435 | 0.72 | 0.544885 |
Target: 5'- gCUCCUUCgauauaagCUUUCCCCCuCACAUCCg- -3' miRNA: 3'- -GGGGAAG--------GGAAGGGGGuGUGUAGGag -5' |
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9708 | 5' | -57.5 | NC_002577.1 | + | 72332 | 0.69 | 0.694533 |
Target: 5'- uUCUC-UCCUgcgUCCCCCACGCcUCCa- -3' miRNA: 3'- -GGGGaAGGGa--AGGGGGUGUGuAGGag -5' |
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9708 | 5' | -57.5 | NC_002577.1 | + | 69408 | 0.67 | 0.832466 |
Target: 5'- aCCUUcCCCUUCgaaUCCAaagGCAUCCUCa -3' miRNA: 3'- gGGGAaGGGAAGg--GGGUg--UGUAGGAG- -5' |
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9708 | 5' | -57.5 | NC_002577.1 | + | 54433 | 0.69 | 0.694533 |
Target: 5'- aCCUCUUCCgaucgaucgUCUCgCCGCGCGUUCUCa -3' miRNA: 3'- -GGGGAAGGga-------AGGG-GGUGUGUAGGAG- -5' |
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9708 | 5' | -57.5 | NC_002577.1 | + | 26496 | 0.7 | 0.634549 |
Target: 5'- gCCCCgUCCgUgaaugUCCCCCACAgucCAUCUUUg -3' miRNA: 3'- -GGGGaAGGgA-----AGGGGGUGU---GUAGGAG- -5' |
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9708 | 5' | -57.5 | NC_002577.1 | + | 16326 | 0.72 | 0.544885 |
Target: 5'- cCCCCcgCCCUcaucuucgaacUCCCCCAUcaucaccauCGUCCUCc -3' miRNA: 3'- -GGGGaaGGGA-----------AGGGGGUGu--------GUAGGAG- -5' |
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9708 | 5' | -57.5 | NC_002577.1 | + | 15510 | 0.67 | 0.832466 |
Target: 5'- aCCCCaggUCCCagaCUCCCGaa-AUCCUCa -3' miRNA: 3'- -GGGGa--AGGGaa-GGGGGUgugUAGGAG- -5' |
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9708 | 5' | -57.5 | NC_002577.1 | + | 11556 | 0.67 | 0.832466 |
Target: 5'- cCUCCUUCCCccccUCCCCCuucuucuCcCGUCCg- -3' miRNA: 3'- -GGGGAAGGGa---AGGGGGu------GuGUAGGag -5' |
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9708 | 5' | -57.5 | NC_002577.1 | + | 11435 | 1.1 | 0.001983 |
Target: 5'- cCCCCUUCCCUUCCCCCACACAUCCUCc -3' miRNA: 3'- -GGGGAAGGGAAGGGGGUGUGUAGGAG- -5' |
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9708 | 5' | -57.5 | NC_002577.1 | + | 9990 | 0.67 | 0.832466 |
Target: 5'- -gCCgUCCCcUCCCCCAUuucguuCcgCCUCg -3' miRNA: 3'- ggGGaAGGGaAGGGGGUGu-----GuaGGAG- -5' |
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9708 | 5' | -57.5 | NC_002577.1 | + | 9261 | 0.68 | 0.752696 |
Target: 5'- gCCCUcUgCgUUUCCCCGCACGgcCCUCg -3' miRNA: 3'- gGGGA-AgGgAAGGGGGUGUGUa-GGAG- -5' |
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9708 | 5' | -57.5 | NC_002577.1 | + | 8910 | 0.7 | 0.644597 |
Target: 5'- gCCCgucgCCCcccCCCUCGCACAUCC-Cg -3' miRNA: 3'- gGGGaa--GGGaa-GGGGGUGUGUAGGaG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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