Results 21 - 40 of 81 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9708 | 5' | -57.5 | NC_002577.1 | + | 139206 | 0.68 | 0.771358 |
Target: 5'- -gCCUUCCCggccUUCCaCCCAC-CGaaucUCCUCg -3' miRNA: 3'- ggGGAAGGG----AAGG-GGGUGuGU----AGGAG- -5' |
|||||||
9708 | 5' | -57.5 | NC_002577.1 | + | 156572 | 0.68 | 0.762083 |
Target: 5'- cCCCCUUagcccCCCUcCUCCUACGCcaCCUCc -3' miRNA: 3'- -GGGGAA-----GGGAaGGGGGUGUGuaGGAG- -5' |
|||||||
9708 | 5' | -57.5 | NC_002577.1 | + | 26496 | 0.7 | 0.634549 |
Target: 5'- gCCCCgUCCgUgaaugUCCCCCACAgucCAUCUUUg -3' miRNA: 3'- -GGGGaAGGgA-----AGGGGGUGU---GUAGGAG- -5' |
|||||||
9708 | 5' | -57.5 | NC_002577.1 | + | 95435 | 0.72 | 0.544885 |
Target: 5'- gCUCCUUCgauauaagCUUUCCCCCuCACAUCCg- -3' miRNA: 3'- -GGGGAAG--------GGAAGGGGGuGUGUAGGag -5' |
|||||||
9708 | 5' | -57.5 | NC_002577.1 | + | 9990 | 0.67 | 0.832466 |
Target: 5'- -gCCgUCCCcUCCCCCAUuucguuCcgCCUCg -3' miRNA: 3'- ggGGaAGGGaAGGGGGUGu-----GuaGGAG- -5' |
|||||||
9708 | 5' | -57.5 | NC_002577.1 | + | 106917 | 0.67 | 0.81577 |
Target: 5'- uCCCCggUCCCaUUCUCCGCGucgcCAUCCa- -3' miRNA: 3'- -GGGGa-AGGGaAGGGGGUGU----GUAGGag -5' |
|||||||
9708 | 5' | -57.5 | NC_002577.1 | + | 9261 | 0.68 | 0.752696 |
Target: 5'- gCCCUcUgCgUUUCCCCGCACGgcCCUCg -3' miRNA: 3'- gGGGA-AgGgAAGGGGGUGUGUa-GGAG- -5' |
|||||||
9708 | 5' | -57.5 | NC_002577.1 | + | 5883 | 0.72 | 0.535127 |
Target: 5'- cCCCCUcccuucuuccUCCCUUCCCCCcCcCuccCCUCu -3' miRNA: 3'- -GGGGA----------AGGGAAGGGGGuGuGua-GGAG- -5' |
|||||||
9708 | 5' | -57.5 | NC_002577.1 | + | 121720 | 0.68 | 0.798432 |
Target: 5'- cCCCCUccgUCCCcggcuccgCUCUCGCgcuccGCAUCCUCu -3' miRNA: 3'- -GGGGA---AGGGaa------GGGGGUG-----UGUAGGAG- -5' |
|||||||
9708 | 5' | -57.5 | NC_002577.1 | + | 125985 | 0.74 | 0.43905 |
Target: 5'- cCCCCUUCCaaggccuaacccccCCCCCGCGCuUUCUCg -3' miRNA: 3'- -GGGGAAGGgaa-----------GGGGGUGUGuAGGAG- -5' |
|||||||
9708 | 5' | -57.5 | NC_002577.1 | + | 158635 | 0.68 | 0.752696 |
Target: 5'- aCCCgcgCUUCCCaUCCCCUACcCcggCCUCc -3' miRNA: 3'- -GGG---GAAGGGaAGGGGGUGuGua-GGAG- -5' |
|||||||
9708 | 5' | -57.5 | NC_002577.1 | + | 156602 | 0.68 | 0.789541 |
Target: 5'- nCCCCUUagcccCCCUcCUCCUACGCcaCCUCc -3' miRNA: 3'- -GGGGAA-----GGGAaGGGGGUGUGuaGGAG- -5' |
|||||||
9708 | 5' | -57.5 | NC_002577.1 | + | 72332 | 0.69 | 0.694533 |
Target: 5'- uUCUC-UCCUgcgUCCCCCACGCcUCCa- -3' miRNA: 3'- -GGGGaAGGGa--AGGGGGUGUGuAGGag -5' |
|||||||
9708 | 5' | -57.5 | NC_002577.1 | + | 8910 | 0.7 | 0.644597 |
Target: 5'- gCCCgucgCCCcccCCCUCGCACAUCC-Cg -3' miRNA: 3'- gGGGaa--GGGaa-GGGGGUGUGUAGGaG- -5' |
|||||||
9708 | 5' | -57.5 | NC_002577.1 | + | 5943 | 0.71 | 0.594414 |
Target: 5'- cCCCCcUCCCUUCCCCCcCuc--CCUUc -3' miRNA: 3'- -GGGGaAGGGAAGGGGGuGuguaGGAG- -5' |
|||||||
9708 | 5' | -57.5 | NC_002577.1 | + | 16326 | 0.72 | 0.544885 |
Target: 5'- cCCCCcgCCCUcaucuucgaacUCCCCCAUcaucaccauCGUCCUCc -3' miRNA: 3'- -GGGGaaGGGA-----------AGGGGGUGu--------GUAGGAG- -5' |
|||||||
9708 | 5' | -57.5 | NC_002577.1 | + | 3596 | 0.66 | 0.863695 |
Target: 5'- gCCC-UCUCUcgCCCCUcCGCGUCCg- -3' miRNA: 3'- gGGGaAGGGAa-GGGGGuGUGUAGGag -5' |
|||||||
9708 | 5' | -57.5 | NC_002577.1 | + | 69408 | 0.67 | 0.832466 |
Target: 5'- aCCUUcCCCUUCgaaUCCAaagGCAUCCUCa -3' miRNA: 3'- gGGGAaGGGAAGg--GGGUg--UGUAGGAG- -5' |
|||||||
9708 | 5' | -57.5 | NC_002577.1 | + | 11556 | 0.67 | 0.832466 |
Target: 5'- cCUCCUUCCCccccUCCCCCuucuucuCcCGUCCg- -3' miRNA: 3'- -GGGGAAGGGa---AGGGGGu------GuGUAGGag -5' |
|||||||
9708 | 5' | -57.5 | NC_002577.1 | + | 156685 | 0.67 | 0.81577 |
Target: 5'- cCCCCcUCCCUcuaCgCAgACAUCCUCc -3' miRNA: 3'- -GGGGaAGGGAaggGgGUgUGUAGGAG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home