miRNA display CGI


Results 1 - 20 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9709 3' -60.4 NC_002577.1 + 26687 0.66 0.764922
Target:  5'- gGACUgugggGGACaUUCaCGGACGGGGCCa- -3'
miRNA:   3'- -UUGGa----CCUGgGAG-GCCUGUUCCGGcc -5'
9709 3' -60.4 NC_002577.1 + 19973 0.66 0.764922
Target:  5'- -cCCUGuGcgucauACCCUuugcuacguguaCCGuGACGGGGCCGGa -3'
miRNA:   3'- uuGGAC-C------UGGGA------------GGC-CUGUUCCGGCC- -5'
9709 3' -60.4 NC_002577.1 + 131044 0.66 0.762174
Target:  5'- --gUUGGGCCCUUagGGGCAggggaggcguuuagGGGUCGGg -3'
miRNA:   3'- uugGACCUGGGAGg-CCUGU--------------UCCGGCC- -5'
9709 3' -60.4 NC_002577.1 + 136902 0.66 0.762174
Target:  5'- ----aGGGCCCgcaCGGGCucgggagaacuugcGGGGCCGGg -3'
miRNA:   3'- uuggaCCUGGGag-GCCUG--------------UUCCGGCC- -5'
9709 3' -60.4 NC_002577.1 + 160440 0.66 0.762174
Target:  5'- cGCaaaGGGCCCgcaCGGGCucgggagaacuugcGGGGCCGGg -3'
miRNA:   3'- uUGga-CCUGGGag-GCCUG--------------UUCCGGCC- -5'
9709 3' -60.4 NC_002577.1 + 2570 0.66 0.762174
Target:  5'- --gUUGGGCCCUUagGGGCAggggaggcguuuagGGGUCGGg -3'
miRNA:   3'- uugGACCUGGGAGg-CCUGU--------------UCCGGCC- -5'
9709 3' -60.4 NC_002577.1 + 135837 0.66 0.746424
Target:  5'- cAGCCUccucGGCCCUuguggCCGGGCGccagAGGCCGc -3'
miRNA:   3'- -UUGGAc---CUGGGA-----GGCCUGU----UCCGGCc -5'
9709 3' -60.4 NC_002577.1 + 161501 0.66 0.746424
Target:  5'- cAGCCUccucGGCCCUuguggCCGGGCGccagAGGCCGc -3'
miRNA:   3'- -UUGGAc---CUGGGA-----GGCCUGU----UCCGGCc -5'
9709 3' -60.4 NC_002577.1 + 122673 0.66 0.727552
Target:  5'- uACCgcGGuCCCgcgcuUUCGGACGgcGGGCCGGc -3'
miRNA:   3'- uUGGa-CCuGGG-----AGGCCUGU--UCCGGCC- -5'
9709 3' -60.4 NC_002577.1 + 41366 0.66 0.727552
Target:  5'- cGCC-GGuGCCaCUCCGGACugcacguacGAGGCCaGGu -3'
miRNA:   3'- uUGGaCC-UGG-GAGGCCUG---------UUCCGG-CC- -5'
9709 3' -60.4 NC_002577.1 + 10941 0.66 0.727552
Target:  5'- uACCgcGGuCCCgcgcuUUCGGACGgcGGGCCGGc -3'
miRNA:   3'- uUGGa-CCuGGG-----AGGCCUGU--UCCGGCC- -5'
9709 3' -60.4 NC_002577.1 + 122909 0.66 0.727552
Target:  5'- -cCCcGGcCCCgcacCCGcGGCGAGGUCGGa -3'
miRNA:   3'- uuGGaCCuGGGa---GGC-CUGUUCCGGCC- -5'
9709 3' -60.4 NC_002577.1 + 10704 0.66 0.727552
Target:  5'- -cCCcGGcCCCgcacCCGcGGCGAGGUCGGa -3'
miRNA:   3'- uuGGaCCuGGGa---GGC-CUGUUCCGGCC- -5'
9709 3' -60.4 NC_002577.1 + 89564 0.67 0.688953
Target:  5'- aGGCCUcGGuuACCuguaCUCCGGGCuAAGaGCCGGu -3'
miRNA:   3'- -UUGGA-CC--UGG----GAGGCCUG-UUC-CGGCC- -5'
9709 3' -60.4 NC_002577.1 + 134892 0.68 0.639769
Target:  5'- gGACaaUGGAgCCUCCcacggcaaagucGGACGGGGCCGc -3'
miRNA:   3'- -UUGg-ACCUgGGAGG------------CCUGUUCCGGCc -5'
9709 3' -60.4 NC_002577.1 + 162436 0.68 0.639769
Target:  5'- gGACaaUGGAgCCUCCcacggcaaagucGGACGGGGCCGc -3'
miRNA:   3'- -UUGg-ACCUgGGAGG------------CCUGUUCCGGCc -5'
9709 3' -60.4 NC_002577.1 + 111941 0.68 0.620004
Target:  5'- uGCCUGGAUgUUCUaGcGGC-AGGCCGGg -3'
miRNA:   3'- uUGGACCUGgGAGG-C-CUGuUCCGGCC- -5'
9709 3' -60.4 NC_002577.1 + 161028 0.69 0.58063
Target:  5'- cGCCUGGGCgggCCGGugGAGagcggcGCCGGa -3'
miRNA:   3'- uUGGACCUGggaGGCCugUUC------CGGCC- -5'
9709 3' -60.4 NC_002577.1 + 136310 0.69 0.58063
Target:  5'- cGCCUGGGCgggCCGGugGAGagcggcGCCGGa -3'
miRNA:   3'- uUGGACCUGggaGGCCugUUC------CGGCC- -5'
9709 3' -60.4 NC_002577.1 + 160366 0.7 0.49457
Target:  5'- -cCCUcGGACgUUCCGGAaGAGGCCGc -3'
miRNA:   3'- uuGGA-CCUGgGAGGCCUgUUCCGGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.