Results 1 - 20 of 26 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9709 | 3' | -60.4 | NC_002577.1 | + | 16172 | 1.08 | 0.001451 |
Target: 5'- cAACCUGGACCCUCCGGACAAGGCCGGg -3' miRNA: 3'- -UUGGACCUGGGAGGCCUGUUCCGGCC- -5' |
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9709 | 3' | -60.4 | NC_002577.1 | + | 6930 | 0.72 | 0.406418 |
Target: 5'- uGGCCggUGGAUgagUCgcgauggCCGGACGGGGCCGGa -3' miRNA: 3'- -UUGG--ACCUG---GGa------GGCCUGUUCCGGCC- -5' |
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9709 | 3' | -60.4 | NC_002577.1 | + | 125433 | 0.72 | 0.381952 |
Target: 5'- cACC-GGugCgUCCGGGCGcucGGCCGGg -3' miRNA: 3'- uUGGaCCugGgAGGCCUGUu--CCGGCC- -5' |
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9709 | 3' | -60.4 | NC_002577.1 | + | 126684 | 0.72 | 0.406418 |
Target: 5'- uGGCCggUGGAUgagUCgcgauggCCGGACGGGGCCGGa -3' miRNA: 3'- -UUGG--ACCUG---GGa------GGCCUGUUCCGGCC- -5' |
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9709 | 3' | -60.4 | NC_002577.1 | + | 8180 | 0.72 | 0.381952 |
Target: 5'- cACC-GGugCgUCCGGGCGcucGGCCGGg -3' miRNA: 3'- uUGGaCCugGgAGGCCUGUu--CCGGCC- -5' |
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9709 | 3' | -60.4 | NC_002577.1 | + | 160366 | 0.7 | 0.49457 |
Target: 5'- -cCCUcGGACgUUCCGGAaGAGGCCGc -3' miRNA: 3'- uuGGA-CCUGgGAGGCCUgUUCCGGCc -5' |
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9709 | 3' | -60.4 | NC_002577.1 | + | 136971 | 0.7 | 0.49457 |
Target: 5'- -cCCUcGGACgUUCCGGAaGAGGCCGc -3' miRNA: 3'- uuGGA-CCUGgGAGGCCUgUUCCGGCc -5' |
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9709 | 3' | -60.4 | NC_002577.1 | + | 161028 | 0.69 | 0.58063 |
Target: 5'- cGCCUGGGCgggCCGGugGAGagcggcGCCGGa -3' miRNA: 3'- uUGGACCUGggaGGCCugUUC------CGGCC- -5' |
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9709 | 3' | -60.4 | NC_002577.1 | + | 136310 | 0.69 | 0.58063 |
Target: 5'- cGCCUGGGCgggCCGGugGAGagcggcGCCGGa -3' miRNA: 3'- uUGGACCUGggaGGCCugUUC------CGGCC- -5' |
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9709 | 3' | -60.4 | NC_002577.1 | + | 134892 | 0.68 | 0.639769 |
Target: 5'- gGACaaUGGAgCCUCCcacggcaaagucGGACGGGGCCGc -3' miRNA: 3'- -UUGg-ACCUgGGAGG------------CCUGUUCCGGCc -5' |
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9709 | 3' | -60.4 | NC_002577.1 | + | 111941 | 0.68 | 0.620004 |
Target: 5'- uGCCUGGAUgUUCUaGcGGC-AGGCCGGg -3' miRNA: 3'- uUGGACCUGgGAGG-C-CUGuUCCGGCC- -5' |
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9709 | 3' | -60.4 | NC_002577.1 | + | 162436 | 0.68 | 0.639769 |
Target: 5'- gGACaaUGGAgCCUCCcacggcaaagucGGACGGGGCCGc -3' miRNA: 3'- -UUGg-ACCUgGGAGG------------CCUGUUCCGGCc -5' |
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9709 | 3' | -60.4 | NC_002577.1 | + | 89564 | 0.67 | 0.688953 |
Target: 5'- aGGCCUcGGuuACCuguaCUCCGGGCuAAGaGCCGGu -3' miRNA: 3'- -UUGGA-CC--UGG----GAGGCCUG-UUC-CGGCC- -5' |
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9709 | 3' | -60.4 | NC_002577.1 | + | 41366 | 0.66 | 0.727552 |
Target: 5'- cGCC-GGuGCCaCUCCGGACugcacguacGAGGCCaGGu -3' miRNA: 3'- uUGGaCC-UGG-GAGGCCUG---------UUCCGG-CC- -5' |
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9709 | 3' | -60.4 | NC_002577.1 | + | 10704 | 0.66 | 0.727552 |
Target: 5'- -cCCcGGcCCCgcacCCGcGGCGAGGUCGGa -3' miRNA: 3'- uuGGaCCuGGGa---GGC-CUGUUCCGGCC- -5' |
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9709 | 3' | -60.4 | NC_002577.1 | + | 122673 | 0.66 | 0.727552 |
Target: 5'- uACCgcGGuCCCgcgcuUUCGGACGgcGGGCCGGc -3' miRNA: 3'- uUGGa-CCuGGG-----AGGCCUGU--UCCGGCC- -5' |
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9709 | 3' | -60.4 | NC_002577.1 | + | 135837 | 0.66 | 0.746424 |
Target: 5'- cAGCCUccucGGCCCUuguggCCGGGCGccagAGGCCGc -3' miRNA: 3'- -UUGGAc---CUGGGA-----GGCCUGU----UCCGGCc -5' |
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9709 | 3' | -60.4 | NC_002577.1 | + | 160440 | 0.66 | 0.762174 |
Target: 5'- cGCaaaGGGCCCgcaCGGGCucgggagaacuugcGGGGCCGGg -3' miRNA: 3'- uUGga-CCUGGGag-GCCUG--------------UUCCGGCC- -5' |
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9709 | 3' | -60.4 | NC_002577.1 | + | 2570 | 0.66 | 0.762174 |
Target: 5'- --gUUGGGCCCUUagGGGCAggggaggcguuuagGGGUCGGg -3' miRNA: 3'- uugGACCUGGGAGg-CCUGU--------------UCCGGCC- -5' |
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9709 | 3' | -60.4 | NC_002577.1 | + | 19973 | 0.66 | 0.764922 |
Target: 5'- -cCCUGuGcgucauACCCUuugcuacguguaCCGuGACGGGGCCGGa -3' miRNA: 3'- uuGGAC-C------UGGGA------------GGC-CUGUUCCGGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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