miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9712 3' -53.1 NC_002577.1 + 143547 0.66 0.981949
Target:  5'- uGGGg-GAGgGGGGguaUGUGUCAGCc-- -3'
miRNA:   3'- -CCCagCUCgCUCCa--AUACAGUCGcuc -5'
9712 3' -53.1 NC_002577.1 + 132036 0.66 0.981745
Target:  5'- aGGGUCaGGGCGugccgcggauugaGGGUcgggGcCGGCGAGg -3'
miRNA:   3'- -CCCAG-CUCGC-------------UCCAaua-CaGUCGCUC- -5'
9712 3' -53.1 NC_002577.1 + 1578 0.66 0.981745
Target:  5'- aGGGUCaGGGCGugccgcggauugaGGGUcgggGcCGGCGAGg -3'
miRNA:   3'- -CCCAG-CUCGC-------------UCCAaua-CaGUCGCUC- -5'
9712 3' -53.1 NC_002577.1 + 121966 0.67 0.972378
Target:  5'- cGGG--GAG-GAGGUUGUGggGGCGGGa -3'
miRNA:   3'- -CCCagCUCgCUCCAAUACagUCGCUC- -5'
9712 3' -53.1 NC_002577.1 + 11647 0.67 0.972378
Target:  5'- cGGG--GAG-GAGGUUGUGggGGCGGGa -3'
miRNA:   3'- -CCCagCUCgCUCCAAUACagUCGCUC- -5'
9712 3' -53.1 NC_002577.1 + 156680 0.67 0.95585
Target:  5'- uGGuGUUGAGCGAacGGUcccggcGUCAGCGGa -3'
miRNA:   3'- -CC-CAGCUCGCU--CCAaua---CAGUCGCUc -5'
9712 3' -53.1 NC_002577.1 + 132465 0.67 0.95585
Target:  5'- gGGGUUGAG-GGGGggAUG-CGGCGc- -3'
miRNA:   3'- -CCCAGCUCgCUCCaaUACaGUCGCuc -5'
9712 3' -53.1 NC_002577.1 + 1149 0.67 0.95585
Target:  5'- gGGGUUGAG-GGGGggAUG-CGGCGc- -3'
miRNA:   3'- -CCCAGCUCgCUCCaaUACaGUCGCuc -5'
9712 3' -53.1 NC_002577.1 + 140658 0.67 0.95585
Target:  5'- uGGuGUUGAGCGAacGGUcccggcGUCAGCGGa -3'
miRNA:   3'- -CC-CAGCUCGCU--CCAaua---CAGUCGCUc -5'
9712 3' -53.1 NC_002577.1 + 30628 0.68 0.951877
Target:  5'- cGGacaCGAGCGuuuuGGUUGUGUCcuguaGGCGAa -3'
miRNA:   3'- cCCa--GCUCGCu---CCAAUACAG-----UCGCUc -5'
9712 3' -53.1 NC_002577.1 + 2438 0.68 0.94045
Target:  5'- cGGGUCGAGUucGGGGUUagaccuuuagggguaGUGUCGGguuuaGGGu -3'
miRNA:   3'- -CCCAGCUCG--CUCCAA---------------UACAGUCg----CUC- -5'
9712 3' -53.1 NC_002577.1 + 131176 0.68 0.94045
Target:  5'- cGGGUCGAGUucGGGGUUagaccuuuagggguaGUGUCGGguuuaGGGu -3'
miRNA:   3'- -CCCAGCUCG--CUCCAA---------------UACAGUCg----CUC- -5'
9712 3' -53.1 NC_002577.1 + 34560 0.69 0.911525
Target:  5'- cGGGcuUgGAGCGGGGUUcaagucaacUGUCAGUGAu -3'
miRNA:   3'- -CCC--AgCUCGCUCCAAu--------ACAGUCGCUc -5'
9712 3' -53.1 NC_002577.1 + 52787 0.71 0.856051
Target:  5'- -uGUCGAGCGGcuugAUGUCAGCGAc -3'
miRNA:   3'- ccCAGCUCGCUccaaUACAGUCGCUc -5'
9712 3' -53.1 NC_002577.1 + 154878 0.73 0.76889
Target:  5'- cGGGUCGGGgaaaGAGGUgggacGUGUUGGCGuGa -3'
miRNA:   3'- -CCCAGCUCg---CUCCAa----UACAGUCGCuC- -5'
9712 3' -53.1 NC_002577.1 + 142460 0.73 0.76889
Target:  5'- cGGGUCGGGgaaaGAGGUgggacGUGUUGGCGuGa -3'
miRNA:   3'- -CCCAGCUCg---CUCCAa----UACAGUCGCuC- -5'
9712 3' -53.1 NC_002577.1 + 19094 1.1 0.005397
Target:  5'- gGGGUCGAGCGAGGUUAUGUCAGCGAGc -3'
miRNA:   3'- -CCCAGCUCGCUCCAAUACAGUCGCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.