Results 1 - 17 of 17 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9712 | 3' | -53.1 | NC_002577.1 | + | 143547 | 0.66 | 0.981949 |
Target: 5'- uGGGg-GAGgGGGGguaUGUGUCAGCc-- -3' miRNA: 3'- -CCCagCUCgCUCCa--AUACAGUCGcuc -5' |
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9712 | 3' | -53.1 | NC_002577.1 | + | 132036 | 0.66 | 0.981745 |
Target: 5'- aGGGUCaGGGCGugccgcggauugaGGGUcgggGcCGGCGAGg -3' miRNA: 3'- -CCCAG-CUCGC-------------UCCAaua-CaGUCGCUC- -5' |
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9712 | 3' | -53.1 | NC_002577.1 | + | 121966 | 0.67 | 0.972378 |
Target: 5'- cGGG--GAG-GAGGUUGUGggGGCGGGa -3' miRNA: 3'- -CCCagCUCgCUCCAAUACagUCGCUC- -5' |
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9712 | 3' | -53.1 | NC_002577.1 | + | 140658 | 0.67 | 0.95585 |
Target: 5'- uGGuGUUGAGCGAacGGUcccggcGUCAGCGGa -3' miRNA: 3'- -CC-CAGCUCGCU--CCAaua---CAGUCGCUc -5' |
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9712 | 3' | -53.1 | NC_002577.1 | + | 132465 | 0.67 | 0.95585 |
Target: 5'- gGGGUUGAG-GGGGggAUG-CGGCGc- -3' miRNA: 3'- -CCCAGCUCgCUCCaaUACaGUCGCuc -5' |
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9712 | 3' | -53.1 | NC_002577.1 | + | 131176 | 0.68 | 0.94045 |
Target: 5'- cGGGUCGAGUucGGGGUUagaccuuuagggguaGUGUCGGguuuaGGGu -3' miRNA: 3'- -CCCAGCUCG--CUCCAA---------------UACAGUCg----CUC- -5' |
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9712 | 3' | -53.1 | NC_002577.1 | + | 154878 | 0.73 | 0.76889 |
Target: 5'- cGGGUCGGGgaaaGAGGUgggacGUGUUGGCGuGa -3' miRNA: 3'- -CCCAGCUCg---CUCCAa----UACAGUCGCuC- -5' |
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9712 | 3' | -53.1 | NC_002577.1 | + | 19094 | 1.1 | 0.005397 |
Target: 5'- gGGGUCGAGCGAGGUUAUGUCAGCGAGc -3' miRNA: 3'- -CCCAGCUCGCUCCAAUACAGUCGCUC- -5' |
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9712 | 3' | -53.1 | NC_002577.1 | + | 142460 | 0.73 | 0.76889 |
Target: 5'- cGGGUCGGGgaaaGAGGUgggacGUGUUGGCGuGa -3' miRNA: 3'- -CCCAGCUCg---CUCCAa----UACAGUCGCuC- -5' |
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9712 | 3' | -53.1 | NC_002577.1 | + | 52787 | 0.71 | 0.856051 |
Target: 5'- -uGUCGAGCGGcuugAUGUCAGCGAc -3' miRNA: 3'- ccCAGCUCGCUccaaUACAGUCGCUc -5' |
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9712 | 3' | -53.1 | NC_002577.1 | + | 34560 | 0.69 | 0.911525 |
Target: 5'- cGGGcuUgGAGCGGGGUUcaagucaacUGUCAGUGAu -3' miRNA: 3'- -CCC--AgCUCGCUCCAAu--------ACAGUCGCUc -5' |
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9712 | 3' | -53.1 | NC_002577.1 | + | 2438 | 0.68 | 0.94045 |
Target: 5'- cGGGUCGAGUucGGGGUUagaccuuuagggguaGUGUCGGguuuaGGGu -3' miRNA: 3'- -CCCAGCUCG--CUCCAA---------------UACAGUCg----CUC- -5' |
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9712 | 3' | -53.1 | NC_002577.1 | + | 30628 | 0.68 | 0.951877 |
Target: 5'- cGGacaCGAGCGuuuuGGUUGUGUCcuguaGGCGAa -3' miRNA: 3'- cCCa--GCUCGCu---CCAAUACAG-----UCGCUc -5' |
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9712 | 3' | -53.1 | NC_002577.1 | + | 156680 | 0.67 | 0.95585 |
Target: 5'- uGGuGUUGAGCGAacGGUcccggcGUCAGCGGa -3' miRNA: 3'- -CC-CAGCUCGCU--CCAaua---CAGUCGCUc -5' |
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9712 | 3' | -53.1 | NC_002577.1 | + | 1149 | 0.67 | 0.95585 |
Target: 5'- gGGGUUGAG-GGGGggAUG-CGGCGc- -3' miRNA: 3'- -CCCAGCUCgCUCCaaUACaGUCGCuc -5' |
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9712 | 3' | -53.1 | NC_002577.1 | + | 11647 | 0.67 | 0.972378 |
Target: 5'- cGGG--GAG-GAGGUUGUGggGGCGGGa -3' miRNA: 3'- -CCCagCUCgCUCCAAUACagUCGCUC- -5' |
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9712 | 3' | -53.1 | NC_002577.1 | + | 1578 | 0.66 | 0.981745 |
Target: 5'- aGGGUCaGGGCGugccgcggauugaGGGUcgggGcCGGCGAGg -3' miRNA: 3'- -CCCAG-CUCGC-------------UCCAaua-CaGUCGCUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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