miRNA display CGI


Results 1 - 20 of 59 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9712 5' -59.1 NC_002577.1 + 47270 0.66 0.855483
Target:  5'- -uUGCGUCGcAUUCGaacaGCCGGuaacgugaccuUCGACGCg -3'
miRNA:   3'- guGCGCAGC-UGGGC----UGGCC-----------AGCUGCG- -5'
9712 5' -59.1 NC_002577.1 + 3610 0.66 0.855483
Target:  5'- gGCGCGaagCGGCUgGgAUCGGgucgCGugGCg -3'
miRNA:   3'- gUGCGCa--GCUGGgC-UGGCCa---GCugCG- -5'
9712 5' -59.1 NC_002577.1 + 129011 0.66 0.855483
Target:  5'- gCGCGCGaCGACgCCGcGCCGucccGUcCGACGUu -3'
miRNA:   3'- -GUGCGCaGCUG-GGC-UGGC----CA-GCUGCG- -5'
9712 5' -59.1 NC_002577.1 + 4603 0.66 0.855483
Target:  5'- gCGCGCGaCGACgCCGcGCCGucccGUcCGACGUu -3'
miRNA:   3'- -GUGCGCaGCUG-GGC-UGGC----CA-GCUGCG- -5'
9712 5' -59.1 NC_002577.1 + 41564 0.66 0.847994
Target:  5'- cCACGUGUCGcgGCCCaacagaagcguGACCGGcccCGAaGCg -3'
miRNA:   3'- -GUGCGCAGC--UGGG-----------CUGGCCa--GCUgCG- -5'
9712 5' -59.1 NC_002577.1 + 158089 0.66 0.847994
Target:  5'- gACGUG-CGGCCCGGCU--UCGAgGUg -3'
miRNA:   3'- gUGCGCaGCUGGGCUGGccAGCUgCG- -5'
9712 5' -59.1 NC_002577.1 + 159894 0.66 0.847994
Target:  5'- --aGCGUCcACCagcucguucagCGGCCGGguaGACGCg -3'
miRNA:   3'- gugCGCAGcUGG-----------GCUGGCCag-CUGCG- -5'
9712 5' -59.1 NC_002577.1 + 139249 0.66 0.847994
Target:  5'- gACGUG-CGGCCCGGCU--UCGAgGUg -3'
miRNA:   3'- gUGCGCaGCUGGGCUGGccAGCUgCG- -5'
9712 5' -59.1 NC_002577.1 + 137444 0.66 0.847994
Target:  5'- --aGCGUCcACCagcucguucagCGGCCGGguaGACGCg -3'
miRNA:   3'- gugCGCAGcUGG-----------GCUGGCCag-CUGCG- -5'
9712 5' -59.1 NC_002577.1 + 20034 0.66 0.845712
Target:  5'- cUACGCGUCGGCgaGugCGG-CGccgaauaccaugccGCGCc -3'
miRNA:   3'- -GUGCGCAGCUGggCugGCCaGC--------------UGCG- -5'
9712 5' -59.1 NC_002577.1 + 11454 0.66 0.83249
Target:  5'- gGCGCcUCcgcuucuuauGACCgGGCCGGUCGugaggGCGUa -3'
miRNA:   3'- gUGCGcAG----------CUGGgCUGGCCAGC-----UGCG- -5'
9712 5' -59.1 NC_002577.1 + 122160 0.66 0.832489
Target:  5'- gGCGCcUCcgcuucuuauGACCgGGCCGGUCGugaggGCGUa -3'
miRNA:   3'- gUGCGcAG----------CUGGgCUGGCCAGC-----UGCG- -5'
9712 5' -59.1 NC_002577.1 + 121652 0.66 0.832489
Target:  5'- -cCGgGUCGucGCCCGGguccgcgcCCGGUCcGCGCc -3'
miRNA:   3'- guGCgCAGC--UGGGCU--------GGCCAGcUGCG- -5'
9712 5' -59.1 NC_002577.1 + 102695 0.66 0.832489
Target:  5'- aCGCGCGUCGgcgaACCUcguGACCGGgaauuuaACGCc -3'
miRNA:   3'- -GUGCGCAGC----UGGG---CUGGCCagc----UGCG- -5'
9712 5' -59.1 NC_002577.1 + 74785 0.67 0.824487
Target:  5'- gAUuCGUCGGCCCGACCGaucCGGC-Ca -3'
miRNA:   3'- gUGcGCAGCUGGGCUGGCca-GCUGcG- -5'
9712 5' -59.1 NC_002577.1 + 155979 0.67 0.824487
Target:  5'- aGCGUGgcCGugccCCCGAcgcCCGGUCGGCaGCc -3'
miRNA:   3'- gUGCGCa-GCu---GGGCU---GGCCAGCUG-CG- -5'
9712 5' -59.1 NC_002577.1 + 141358 0.67 0.824487
Target:  5'- aGCGUGgcCGugccCCCGAcgcCCGGUCGGCaGCc -3'
miRNA:   3'- gUGCGCa-GCu---GGGCU---GGCCAGCUG-CG- -5'
9712 5' -59.1 NC_002577.1 + 12087 0.67 0.824487
Target:  5'- gCGCGCGUgCGcCUCGuCCGcGUCcGCGCc -3'
miRNA:   3'- -GUGCGCA-GCuGGGCuGGC-CAGcUGCG- -5'
9712 5' -59.1 NC_002577.1 + 43000 0.67 0.816326
Target:  5'- gACGCuUCG--CCGAUCGGUgGAUGCu -3'
miRNA:   3'- gUGCGcAGCugGGCUGGCCAgCUGCG- -5'
9712 5' -59.1 NC_002577.1 + 97647 0.67 0.815502
Target:  5'- gCACGUGUUcauuagaGACCCGACUGG-CGucucugaccACGUg -3'
miRNA:   3'- -GUGCGCAG-------CUGGGCUGGCCaGC---------UGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.