Results 1 - 20 of 59 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
9712 | 5' | -59.1 | NC_002577.1 | + | 47270 | 0.66 | 0.855483 |
Target: 5'- -uUGCGUCGcAUUCGaacaGCCGGuaacgugaccuUCGACGCg -3' miRNA: 3'- guGCGCAGC-UGGGC----UGGCC-----------AGCUGCG- -5' |
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9712 | 5' | -59.1 | NC_002577.1 | + | 122160 | 0.66 | 0.832489 |
Target: 5'- gGCGCcUCcgcuucuuauGACCgGGCCGGUCGugaggGCGUa -3' miRNA: 3'- gUGCGcAG----------CUGGgCUGGCCAGC-----UGCG- -5' |
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9712 | 5' | -59.1 | NC_002577.1 | + | 121652 | 0.66 | 0.832489 |
Target: 5'- -cCGgGUCGucGCCCGGguccgcgcCCGGUCcGCGCc -3' miRNA: 3'- guGCgCAGC--UGGGCU--------GGCCAGcUGCG- -5' |
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9712 | 5' | -59.1 | NC_002577.1 | + | 41564 | 0.66 | 0.847994 |
Target: 5'- cCACGUGUCGcgGCCCaacagaagcguGACCGGcccCGAaGCg -3' miRNA: 3'- -GUGCGCAGC--UGGG-----------CUGGCCa--GCUgCG- -5' |
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9712 | 5' | -59.1 | NC_002577.1 | + | 158089 | 0.66 | 0.847994 |
Target: 5'- gACGUG-CGGCCCGGCU--UCGAgGUg -3' miRNA: 3'- gUGCGCaGCUGGGCUGGccAGCUgCG- -5' |
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9712 | 5' | -59.1 | NC_002577.1 | + | 4603 | 0.66 | 0.855483 |
Target: 5'- gCGCGCGaCGACgCCGcGCCGucccGUcCGACGUu -3' miRNA: 3'- -GUGCGCaGCUG-GGC-UGGC----CA-GCUGCG- -5' |
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9712 | 5' | -59.1 | NC_002577.1 | + | 102695 | 0.66 | 0.832489 |
Target: 5'- aCGCGCGUCGgcgaACCUcguGACCGGgaauuuaACGCc -3' miRNA: 3'- -GUGCGCAGC----UGGG---CUGGCCagc----UGCG- -5' |
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9712 | 5' | -59.1 | NC_002577.1 | + | 137444 | 0.66 | 0.847994 |
Target: 5'- --aGCGUCcACCagcucguucagCGGCCGGguaGACGCg -3' miRNA: 3'- gugCGCAGcUGG-----------GCUGGCCag-CUGCG- -5' |
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9712 | 5' | -59.1 | NC_002577.1 | + | 11454 | 0.66 | 0.83249 |
Target: 5'- gGCGCcUCcgcuucuuauGACCgGGCCGGUCGugaggGCGUa -3' miRNA: 3'- gUGCGcAG----------CUGGgCUGGCCAGC-----UGCG- -5' |
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9712 | 5' | -59.1 | NC_002577.1 | + | 20034 | 0.66 | 0.845712 |
Target: 5'- cUACGCGUCGGCgaGugCGG-CGccgaauaccaugccGCGCc -3' miRNA: 3'- -GUGCGCAGCUGggCugGCCaGC--------------UGCG- -5' |
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9712 | 5' | -59.1 | NC_002577.1 | + | 159894 | 0.66 | 0.847994 |
Target: 5'- --aGCGUCcACCagcucguucagCGGCCGGguaGACGCg -3' miRNA: 3'- gugCGCAGcUGG-----------GCUGGCCag-CUGCG- -5' |
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9712 | 5' | -59.1 | NC_002577.1 | + | 3610 | 0.66 | 0.855483 |
Target: 5'- gGCGCGaagCGGCUgGgAUCGGgucgCGugGCg -3' miRNA: 3'- gUGCGCa--GCUGGgC-UGGCCa---GCugCG- -5' |
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9712 | 5' | -59.1 | NC_002577.1 | + | 129011 | 0.66 | 0.855483 |
Target: 5'- gCGCGCGaCGACgCCGcGCCGucccGUcCGACGUu -3' miRNA: 3'- -GUGCGCaGCUG-GGC-UGGC----CA-GCUGCG- -5' |
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9712 | 5' | -59.1 | NC_002577.1 | + | 139249 | 0.66 | 0.847994 |
Target: 5'- gACGUG-CGGCCCGGCU--UCGAgGUg -3' miRNA: 3'- gUGCGCaGCUGGGCUGGccAGCUgCG- -5' |
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9712 | 5' | -59.1 | NC_002577.1 | + | 155979 | 0.67 | 0.824487 |
Target: 5'- aGCGUGgcCGugccCCCGAcgcCCGGUCGGCaGCc -3' miRNA: 3'- gUGCGCa-GCu---GGGCU---GGCCAGCUG-CG- -5' |
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9712 | 5' | -59.1 | NC_002577.1 | + | 74785 | 0.67 | 0.824487 |
Target: 5'- gAUuCGUCGGCCCGACCGaucCGGC-Ca -3' miRNA: 3'- gUGcGCAGCUGGGCUGGCca-GCUGcG- -5' |
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9712 | 5' | -59.1 | NC_002577.1 | + | 66367 | 0.67 | 0.78224 |
Target: 5'- -cUGCGUauaUGGCCCgcguggcagGACUGGUCGGgGCa -3' miRNA: 3'- guGCGCA---GCUGGG---------CUGGCCAGCUgCG- -5' |
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9712 | 5' | -59.1 | NC_002577.1 | + | 17574 | 0.67 | 0.78224 |
Target: 5'- gGCGCGaaacgggCGGaggUCCGAUCGGccggCGACGCu -3' miRNA: 3'- gUGCGCa------GCU---GGGCUGGCCa---GCUGCG- -5' |
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9712 | 5' | -59.1 | NC_002577.1 | + | 156004 | 0.67 | 0.799557 |
Target: 5'- aCGCGCGcCGGUCCaACCGuGgCGACGCc -3' miRNA: 3'- -GUGCGCaGCUGGGcUGGC-CaGCUGCG- -5' |
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9712 | 5' | -59.1 | NC_002577.1 | + | 103827 | 0.67 | 0.799557 |
Target: 5'- uCGCGCGUgGGCgCGACUgcuaGGcCGugGUc -3' miRNA: 3'- -GUGCGCAgCUGgGCUGG----CCaGCugCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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