Results 1 - 20 of 59 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
9712 | 5' | -59.1 | NC_002577.1 | + | 19128 | 1.11 | 0.001693 |
Target: 5'- aCACGCGUCGACCCGACCGGUCGACGCu -3' miRNA: 3'- -GUGCGCAGCUGGGCUGGCCAGCUGCG- -5' |
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9712 | 5' | -59.1 | NC_002577.1 | + | 19319 | 0.82 | 0.144887 |
Target: 5'- --aGCGUCGACCgGuCgGGUCGACGCg -3' miRNA: 3'- gugCGCAGCUGGgCuGgCCAGCUGCG- -5' |
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9712 | 5' | -59.1 | NC_002577.1 | + | 98933 | 0.78 | 0.244358 |
Target: 5'- cCGCGUGUgucaaCGACCCGcCuCGGUCGACGUu -3' miRNA: 3'- -GUGCGCA-----GCUGGGCuG-GCCAGCUGCG- -5' |
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9712 | 5' | -59.1 | NC_002577.1 | + | 11641 | 0.74 | 0.410704 |
Target: 5'- gACGCGaucgCGACCCGACCGcugaUCcGCGCg -3' miRNA: 3'- gUGCGCa---GCUGGGCUGGCc---AGcUGCG- -5' |
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9712 | 5' | -59.1 | NC_002577.1 | + | 121973 | 0.74 | 0.410705 |
Target: 5'- gACGCGaucgCGACCCGACCGcugaUCcGCGCg -3' miRNA: 3'- gUGCGCa---GCUGGGCUGGCc---AGcUGCG- -5' |
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9712 | 5' | -59.1 | NC_002577.1 | + | 159693 | 0.74 | 0.427404 |
Target: 5'- -uCGCGUCuACCCGGCCgcugaacgagcuGGUgGACGCu -3' miRNA: 3'- guGCGCAGcUGGGCUGG------------CCAgCUGCG- -5' |
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9712 | 5' | -59.1 | NC_002577.1 | + | 137644 | 0.74 | 0.427404 |
Target: 5'- -uCGCGUCuACCCGGCCgcugaacgagcuGGUgGACGCu -3' miRNA: 3'- guGCGCAGcUGGGCUGG------------CCAgCUGCG- -5' |
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9712 | 5' | -59.1 | NC_002577.1 | + | 153594 | 0.72 | 0.51641 |
Target: 5'- gCAaaCGg-GGCCCGGCCGGcgCGACGCa -3' miRNA: 3'- -GUgcGCagCUGGGCUGGCCa-GCUGCG- -5' |
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9712 | 5' | -59.1 | NC_002577.1 | + | 11784 | 0.72 | 0.525741 |
Target: 5'- cCGgGCGaCGACCCGGgcgacgacCCGGgcgaCGACGCg -3' miRNA: 3'- -GUgCGCaGCUGGGCU--------GGCCa---GCUGCG- -5' |
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9712 | 5' | -59.1 | NC_002577.1 | + | 137569 | 0.71 | 0.582885 |
Target: 5'- uGCGCG--GACCCGA-CGGUCcgGGCGCg -3' miRNA: 3'- gUGCGCagCUGGGCUgGCCAG--CUGCG- -5' |
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9712 | 5' | -59.1 | NC_002577.1 | + | 159768 | 0.71 | 0.582885 |
Target: 5'- uGCGCG--GACCCGA-CGGUCcgGGCGCg -3' miRNA: 3'- gUGCGCagCUGGGCUgGCCAG--CUGCG- -5' |
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9712 | 5' | -59.1 | NC_002577.1 | + | 121586 | 0.71 | 0.602247 |
Target: 5'- cCGCGCGcUCGGCgCG-CCGGagcaGGCGCg -3' miRNA: 3'- -GUGCGC-AGCUGgGCuGGCCag--CUGCG- -5' |
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9712 | 5' | -59.1 | NC_002577.1 | + | 4871 | 0.7 | 0.621689 |
Target: 5'- gCGCGCGcCGauGCUCGGCCGGUUcuuCGCc -3' miRNA: 3'- -GUGCGCaGC--UGGGCUGGCCAGcu-GCG- -5' |
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9712 | 5' | -59.1 | NC_002577.1 | + | 128743 | 0.7 | 0.62169 |
Target: 5'- gCGCGCGcCGauGCUCGGCCGGUUcuuCGCc -3' miRNA: 3'- -GUGCGCaGC--UGGGCUGGCCAGcu-GCG- -5' |
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9712 | 5' | -59.1 | NC_002577.1 | + | 11829 | 0.7 | 0.650889 |
Target: 5'- gACGCGggcgaCGACCCGGgcgccgacCCGGgCGACGa -3' miRNA: 3'- gUGCGCa----GCUGGGCU--------GGCCaGCUGCg -5' |
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9712 | 5' | -59.1 | NC_002577.1 | + | 125666 | 0.69 | 0.6703 |
Target: 5'- aGCGCGUaaguacCGGCguuCCGGgCGGUCGGCGa -3' miRNA: 3'- gUGCGCA------GCUG---GGCUgGCCAGCUGCg -5' |
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9712 | 5' | -59.1 | NC_002577.1 | + | 97537 | 0.69 | 0.6703 |
Target: 5'- gCGCGCGUCu-CCCGcccagcacggacGCCGaGgCGACGCg -3' miRNA: 3'- -GUGCGCAGcuGGGC------------UGGC-CaGCUGCG- -5' |
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9712 | 5' | -59.1 | NC_002577.1 | + | 7948 | 0.69 | 0.670301 |
Target: 5'- aGCGCGUaaguacCGGCguuCCGGgCGGUCGGCGa -3' miRNA: 3'- gUGCGCA------GCUG---GGCUgGCCAGCUGCg -5' |
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9712 | 5' | -59.1 | NC_002577.1 | + | 101345 | 0.69 | 0.689599 |
Target: 5'- aACGCcuuuuggaGGCaCCGACCGGUCcACGCc -3' miRNA: 3'- gUGCGcag-----CUG-GGCUGGCCAGcUGCG- -5' |
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9712 | 5' | -59.1 | NC_002577.1 | + | 97742 | 0.69 | 0.718202 |
Target: 5'- uCGCGCGUCGcCUCGGCguccgugcugggCGGgaGACGCg -3' miRNA: 3'- -GUGCGCAGCuGGGCUG------------GCCagCUGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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