miRNA display CGI


Results 21 - 40 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9712 5' -59.1 NC_002577.1 + 141334 0.67 0.799557
Target:  5'- aCGCGCGcCGGUCCaACCGuGgCGACGCc -3'
miRNA:   3'- -GUGCGCaGCUGGGcUGGC-CaGCUGCG- -5'
9712 5' -59.1 NC_002577.1 + 156004 0.67 0.799557
Target:  5'- aCGCGCGcCGGUCCaACCGuGgCGACGCc -3'
miRNA:   3'- -GUGCGCaGCUGGGcUGGC-CaGCUGCG- -5'
9712 5' -59.1 NC_002577.1 + 103827 0.67 0.799557
Target:  5'- uCGCGCGUgGGCgCGACUgcuaGGcCGugGUc -3'
miRNA:   3'- -GUGCGCAgCUGgGCUGG----CCaGCugCG- -5'
9712 5' -59.1 NC_002577.1 + 60222 0.67 0.78224
Target:  5'- --gGCGgCGGCCuCGGgCGGggCGACGCc -3'
miRNA:   3'- gugCGCaGCUGG-GCUgGCCa-GCUGCG- -5'
9712 5' -59.1 NC_002577.1 + 17574 0.67 0.78224
Target:  5'- gGCGCGaaacgggCGGaggUCCGAUCGGccggCGACGCu -3'
miRNA:   3'- gUGCGCa------GCU---GGGCUGGCCa---GCUGCG- -5'
9712 5' -59.1 NC_002577.1 + 66367 0.67 0.78224
Target:  5'- -cUGCGUauaUGGCCCgcguggcagGACUGGUCGGgGCa -3'
miRNA:   3'- guGCGCA---GCUGGG---------CUGGCCAGCUgCG- -5'
9712 5' -59.1 NC_002577.1 + 5111 0.68 0.772504
Target:  5'- gCGCGCGUCGcCCUGuccgucCCGGUUGuccuagaACGUg -3'
miRNA:   3'- -GUGCGCAGCuGGGCu-----GGCCAGC-------UGCG- -5'
9712 5' -59.1 NC_002577.1 + 128502 0.68 0.772504
Target:  5'- gCGCGCGUCGcCCUGuccgucCCGGUUGuccuagaACGUg -3'
miRNA:   3'- -GUGCGCAGCuGGGCu-----GGCCAGC-------UGCG- -5'
9712 5' -59.1 NC_002577.1 + 11868 0.68 0.746206
Target:  5'- cCGgGCGaCGACCCGGgcgacgacCCGGgcgCGgACGCg -3'
miRNA:   3'- -GUgCGCaGCUGGGCU--------GGCCa--GC-UGCG- -5'
9712 5' -59.1 NC_002577.1 + 121830 0.68 0.746206
Target:  5'- cCGgGCGaCGACCCGGgcgacgacCCGGgcgCGgACGCg -3'
miRNA:   3'- -GUgCGCaGCUGGGCU--------GGCCa--GC-UGCG- -5'
9712 5' -59.1 NC_002577.1 + 11986 0.68 0.727614
Target:  5'- -cCGCGUCGucGCCCGGgucgucgcCCGgGUCGuCGCc -3'
miRNA:   3'- guGCGCAGC--UGGGCU--------GGC-CAGCuGCG- -5'
9712 5' -59.1 NC_002577.1 + 12046 0.68 0.727614
Target:  5'- -cCGgGUCGucGCCCGGgucgucgcCCgGGUCGGCGCc -3'
miRNA:   3'- guGCgCAGC--UGGGCU--------GG-CCAGCUGCG- -5'
9712 5' -59.1 NC_002577.1 + 138465 0.68 0.727614
Target:  5'- gACgGCG-CGGCCgCGGCCGG-CgGGCGCc -3'
miRNA:   3'- gUG-CGCaGCUGG-GCUGGCCaG-CUGCG- -5'
9712 5' -59.1 NC_002577.1 + 158872 0.68 0.727614
Target:  5'- gACgGCG-CGGCCgCGGCCGG-CgGGCGCc -3'
miRNA:   3'- gUG-CGCaGCUGG-GCUGGCCaG-CUGCG- -5'
9712 5' -59.1 NC_002577.1 + 10572 0.69 0.718202
Target:  5'- aCGCGCGUCGGUCCGuuucuGCCcuugCGGCGCu -3'
miRNA:   3'- -GUGCGCAGCUGGGC-----UGGcca-GCUGCG- -5'
9712 5' -59.1 NC_002577.1 + 123042 0.69 0.718202
Target:  5'- aCGCGCGUCGGUCCGuuucuGCCcuugCGGCGCu -3'
miRNA:   3'- -GUGCGCAGCUGGGC-----UGGcca-GCUGCG- -5'
9712 5' -59.1 NC_002577.1 + 121837 0.69 0.718202
Target:  5'- gCAuCGCGuUCcGCCgGGCCGGUCgGACGg -3'
miRNA:   3'- -GU-GCGC-AGcUGGgCUGGCCAG-CUGCg -5'
9712 5' -59.1 NC_002577.1 + 38546 0.69 0.718202
Target:  5'- aGCGCauuuGUCG-CCCGGCgGGcCGGCGa -3'
miRNA:   3'- gUGCG----CAGCuGGGCUGgCCaGCUGCg -5'
9712 5' -59.1 NC_002577.1 + 97742 0.69 0.718202
Target:  5'- uCGCGCGUCGcCUCGGCguccgugcugggCGGgaGACGCg -3'
miRNA:   3'- -GUGCGCAGCuGGGCUG------------GCCagCUGCG- -5'
9712 5' -59.1 NC_002577.1 + 11776 0.69 0.718202
Target:  5'- gCAuCGCGuUCcGCCgGGCCGGUCgGACGg -3'
miRNA:   3'- -GU-GCGC-AGcUGGgCUGGCCAG-CUGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.