miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9712 5' -59.1 NC_002577.1 + 3610 0.66 0.855483
Target:  5'- gGCGCGaagCGGCUgGgAUCGGgucgCGugGCg -3'
miRNA:   3'- gUGCGCa--GCUGGgC-UGGCCa---GCugCG- -5'
9712 5' -59.1 NC_002577.1 + 4603 0.66 0.855483
Target:  5'- gCGCGCGaCGACgCCGcGCCGucccGUcCGACGUu -3'
miRNA:   3'- -GUGCGCaGCUG-GGC-UGGC----CA-GCUGCG- -5'
9712 5' -59.1 NC_002577.1 + 4871 0.7 0.621689
Target:  5'- gCGCGCGcCGauGCUCGGCCGGUUcuuCGCc -3'
miRNA:   3'- -GUGCGCaGC--UGGGCUGGCCAGcu-GCG- -5'
9712 5' -59.1 NC_002577.1 + 5111 0.68 0.772504
Target:  5'- gCGCGCGUCGcCCUGuccgucCCGGUUGuccuagaACGUg -3'
miRNA:   3'- -GUGCGCAGCuGGGCu-----GGCCAGC-------UGCG- -5'
9712 5' -59.1 NC_002577.1 + 7948 0.69 0.670301
Target:  5'- aGCGCGUaaguacCGGCguuCCGGgCGGUCGGCGa -3'
miRNA:   3'- gUGCGCA------GCUG---GGCUgGCCAGCUGCg -5'
9712 5' -59.1 NC_002577.1 + 10572 0.69 0.718202
Target:  5'- aCGCGCGUCGGUCCGuuucuGCCcuugCGGCGCu -3'
miRNA:   3'- -GUGCGCAGCUGGGC-----UGGcca-GCUGCG- -5'
9712 5' -59.1 NC_002577.1 + 11454 0.66 0.83249
Target:  5'- gGCGCcUCcgcuucuuauGACCgGGCCGGUCGugaggGCGUa -3'
miRNA:   3'- gUGCGcAG----------CUGGgCUGGCCAGC-----UGCG- -5'
9712 5' -59.1 NC_002577.1 + 11641 0.74 0.410704
Target:  5'- gACGCGaucgCGACCCGACCGcugaUCcGCGCg -3'
miRNA:   3'- gUGCGCa---GCUGGGCUGGCc---AGcUGCG- -5'
9712 5' -59.1 NC_002577.1 + 11776 0.69 0.718202
Target:  5'- gCAuCGCGuUCcGCCgGGCCGGUCgGACGg -3'
miRNA:   3'- -GU-GCGC-AGcUGGgCUGGCCAG-CUGCg -5'
9712 5' -59.1 NC_002577.1 + 11784 0.72 0.525741
Target:  5'- cCGgGCGaCGACCCGGgcgacgacCCGGgcgaCGACGCg -3'
miRNA:   3'- -GUgCGCaGCUGGGCU--------GGCCa---GCUGCG- -5'
9712 5' -59.1 NC_002577.1 + 11829 0.7 0.650889
Target:  5'- gACGCGggcgaCGACCCGGgcgccgacCCGGgCGACGa -3'
miRNA:   3'- gUGCGCa----GCUGGGCU--------GGCCaGCUGCg -5'
9712 5' -59.1 NC_002577.1 + 11868 0.68 0.746206
Target:  5'- cCGgGCGaCGACCCGGgcgacgacCCGGgcgCGgACGCg -3'
miRNA:   3'- -GUgCGCaGCUGGGCU--------GGCCa--GC-UGCG- -5'
9712 5' -59.1 NC_002577.1 + 11986 0.68 0.727614
Target:  5'- -cCGCGUCGucGCCCGGgucgucgcCCGgGUCGuCGCc -3'
miRNA:   3'- guGCGCAGC--UGGGCU--------GGC-CAGCuGCG- -5'
9712 5' -59.1 NC_002577.1 + 12046 0.68 0.727614
Target:  5'- -cCGgGUCGucGCCCGGgucgucgcCCgGGUCGGCGCc -3'
miRNA:   3'- guGCgCAGC--UGGGCU--------GG-CCAGCUGCG- -5'
9712 5' -59.1 NC_002577.1 + 12087 0.67 0.824487
Target:  5'- gCGCGCGUgCGcCUCGuCCGcGUCcGCGCc -3'
miRNA:   3'- -GUGCGCA-GCuGGGCuGGC-CAGcUGCG- -5'
9712 5' -59.1 NC_002577.1 + 17574 0.67 0.78224
Target:  5'- gGCGCGaaacgggCGGaggUCCGAUCGGccggCGACGCu -3'
miRNA:   3'- gUGCGCa------GCU---GGGCUGGCCa---GCUGCG- -5'
9712 5' -59.1 NC_002577.1 + 19128 1.11 0.001693
Target:  5'- aCACGCGUCGACCCGACCGGUCGACGCu -3'
miRNA:   3'- -GUGCGCAGCUGGGCUGGCCAGCUGCG- -5'
9712 5' -59.1 NC_002577.1 + 19319 0.82 0.144887
Target:  5'- --aGCGUCGACCgGuCgGGUCGACGCg -3'
miRNA:   3'- gugCGCAGCUGGgCuGgCCAGCUGCG- -5'
9712 5' -59.1 NC_002577.1 + 20034 0.66 0.845712
Target:  5'- cUACGCGUCGGCgaGugCGG-CGccgaauaccaugccGCGCc -3'
miRNA:   3'- -GUGCGCAGCUGggCugGCCaGC--------------UGCG- -5'
9712 5' -59.1 NC_002577.1 + 38546 0.69 0.718202
Target:  5'- aGCGCauuuGUCG-CCCGGCgGGcCGGCGa -3'
miRNA:   3'- gUGCG----CAGCuGGGCUGgCCaGCUGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.