miRNA display CGI


Results 21 - 40 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9712 5' -59.1 NC_002577.1 + 41564 0.66 0.847994
Target:  5'- cCACGUGUCGcgGCCCaacagaagcguGACCGGcccCGAaGCg -3'
miRNA:   3'- -GUGCGCAGC--UGGG-----------CUGGCCa--GCUgCG- -5'
9712 5' -59.1 NC_002577.1 + 43000 0.67 0.816326
Target:  5'- gACGCuUCG--CCGAUCGGUgGAUGCu -3'
miRNA:   3'- gUGCGcAGCugGGCUGGCCAgCUGCG- -5'
9712 5' -59.1 NC_002577.1 + 47270 0.66 0.855483
Target:  5'- -uUGCGUCGcAUUCGaacaGCCGGuaacgugaccuUCGACGCg -3'
miRNA:   3'- guGCGCAGC-UGGGC----UGGCC-----------AGCUGCG- -5'
9712 5' -59.1 NC_002577.1 + 60222 0.67 0.78224
Target:  5'- --gGCGgCGGCCuCGGgCGGggCGACGCc -3'
miRNA:   3'- gugCGCaGCUGG-GCUgGCCa-GCUGCG- -5'
9712 5' -59.1 NC_002577.1 + 66367 0.67 0.78224
Target:  5'- -cUGCGUauaUGGCCCgcguggcagGACUGGUCGGgGCa -3'
miRNA:   3'- guGCGCA---GCUGGG---------CUGGCCAGCUgCG- -5'
9712 5' -59.1 NC_002577.1 + 74785 0.67 0.824487
Target:  5'- gAUuCGUCGGCCCGACCGaucCGGC-Ca -3'
miRNA:   3'- gUGcGCAGCUGGGCUGGCca-GCUGcG- -5'
9712 5' -59.1 NC_002577.1 + 97537 0.69 0.6703
Target:  5'- gCGCGCGUCu-CCCGcccagcacggacGCCGaGgCGACGCg -3'
miRNA:   3'- -GUGCGCAGcuGGGC------------UGGC-CaGCUGCG- -5'
9712 5' -59.1 NC_002577.1 + 97647 0.67 0.815502
Target:  5'- gCACGUGUUcauuagaGACCCGACUGG-CGucucugaccACGUg -3'
miRNA:   3'- -GUGCGCAG-------CUGGGCUGGCCaGC---------UGCG- -5'
9712 5' -59.1 NC_002577.1 + 97742 0.69 0.718202
Target:  5'- uCGCGCGUCGcCUCGGCguccgugcugggCGGgaGACGCg -3'
miRNA:   3'- -GUGCGCAGCuGGGCUG------------GCCagCUGCG- -5'
9712 5' -59.1 NC_002577.1 + 98933 0.78 0.244358
Target:  5'- cCGCGUGUgucaaCGACCCGcCuCGGUCGACGUu -3'
miRNA:   3'- -GUGCGCA-----GCUGGGCuG-GCCAGCUGCG- -5'
9712 5' -59.1 NC_002577.1 + 101345 0.69 0.689599
Target:  5'- aACGCcuuuuggaGGCaCCGACCGGUCcACGCc -3'
miRNA:   3'- gUGCGcag-----CUG-GGCUGGCCAGcUGCG- -5'
9712 5' -59.1 NC_002577.1 + 102695 0.66 0.832489
Target:  5'- aCGCGCGUCGgcgaACCUcguGACCGGgaauuuaACGCc -3'
miRNA:   3'- -GUGCGCAGC----UGGG---CUGGCCagc----UGCG- -5'
9712 5' -59.1 NC_002577.1 + 103827 0.67 0.799557
Target:  5'- uCGCGCGUgGGCgCGACUgcuaGGcCGugGUc -3'
miRNA:   3'- -GUGCGCAgCUGgGCUGG----CCaGCugCG- -5'
9712 5' -59.1 NC_002577.1 + 121586 0.71 0.602247
Target:  5'- cCGCGCGcUCGGCgCG-CCGGagcaGGCGCg -3'
miRNA:   3'- -GUGCGC-AGCUGgGCuGGCCag--CUGCG- -5'
9712 5' -59.1 NC_002577.1 + 121652 0.66 0.832489
Target:  5'- -cCGgGUCGucGCCCGGguccgcgcCCGGUCcGCGCc -3'
miRNA:   3'- guGCgCAGC--UGGGCU--------GGCCAGcUGCG- -5'
9712 5' -59.1 NC_002577.1 + 121830 0.68 0.746206
Target:  5'- cCGgGCGaCGACCCGGgcgacgacCCGGgcgCGgACGCg -3'
miRNA:   3'- -GUgCGCaGCUGGGCU--------GGCCa--GC-UGCG- -5'
9712 5' -59.1 NC_002577.1 + 121837 0.69 0.718202
Target:  5'- gCAuCGCGuUCcGCCgGGCCGGUCgGACGg -3'
miRNA:   3'- -GU-GCGC-AGcUGGgCUGGCCAG-CUGCg -5'
9712 5' -59.1 NC_002577.1 + 121973 0.74 0.410705
Target:  5'- gACGCGaucgCGACCCGACCGcugaUCcGCGCg -3'
miRNA:   3'- gUGCGCa---GCUGGGCUGGCc---AGcUGCG- -5'
9712 5' -59.1 NC_002577.1 + 122160 0.66 0.832489
Target:  5'- gGCGCcUCcgcuucuuauGACCgGGCCGGUCGugaggGCGUa -3'
miRNA:   3'- gUGCGcAG----------CUGGgCUGGCCAGC-----UGCG- -5'
9712 5' -59.1 NC_002577.1 + 123042 0.69 0.718202
Target:  5'- aCGCGCGUCGGUCCGuuucuGCCcuugCGGCGCu -3'
miRNA:   3'- -GUGCGCAGCUGGGC-----UGGcca-GCUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.