miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9712 5' -59.1 NC_002577.1 + 159894 0.66 0.847994
Target:  5'- --aGCGUCcACCagcucguucagCGGCCGGguaGACGCg -3'
miRNA:   3'- gugCGCAGcUGG-----------GCUGGCCag-CUGCG- -5'
9712 5' -59.1 NC_002577.1 + 159768 0.71 0.582885
Target:  5'- uGCGCG--GACCCGA-CGGUCcgGGCGCg -3'
miRNA:   3'- gUGCGCagCUGGGCUgGCCAG--CUGCG- -5'
9712 5' -59.1 NC_002577.1 + 159693 0.74 0.427404
Target:  5'- -uCGCGUCuACCCGGCCgcugaacgagcuGGUgGACGCu -3'
miRNA:   3'- guGCGCAGcUGGGCUGG------------CCAgCUGCG- -5'
9712 5' -59.1 NC_002577.1 + 158872 0.68 0.727614
Target:  5'- gACgGCG-CGGCCgCGGCCGG-CgGGCGCc -3'
miRNA:   3'- gUG-CGCaGCUGG-GCUGGCCaG-CUGCG- -5'
9712 5' -59.1 NC_002577.1 + 158089 0.66 0.847994
Target:  5'- gACGUG-CGGCCCGGCU--UCGAgGUg -3'
miRNA:   3'- gUGCGCaGCUGGGCUGGccAGCUgCG- -5'
9712 5' -59.1 NC_002577.1 + 156004 0.67 0.799557
Target:  5'- aCGCGCGcCGGUCCaACCGuGgCGACGCc -3'
miRNA:   3'- -GUGCGCaGCUGGGcUGGC-CaGCUGCG- -5'
9712 5' -59.1 NC_002577.1 + 155979 0.67 0.824487
Target:  5'- aGCGUGgcCGugccCCCGAcgcCCGGUCGGCaGCc -3'
miRNA:   3'- gUGCGCa-GCu---GGGCU---GGCCAGCUG-CG- -5'
9712 5' -59.1 NC_002577.1 + 153594 0.72 0.51641
Target:  5'- gCAaaCGg-GGCCCGGCCGGcgCGACGCa -3'
miRNA:   3'- -GUgcGCagCUGGGCUGGCCa-GCUGCG- -5'
9712 5' -59.1 NC_002577.1 + 141358 0.67 0.824487
Target:  5'- aGCGUGgcCGugccCCCGAcgcCCGGUCGGCaGCc -3'
miRNA:   3'- gUGCGCa-GCu---GGGCU---GGCCAGCUG-CG- -5'
9712 5' -59.1 NC_002577.1 + 141334 0.67 0.799557
Target:  5'- aCGCGCGcCGGUCCaACCGuGgCGACGCc -3'
miRNA:   3'- -GUGCGCaGCUGGGcUGGC-CaGCUGCG- -5'
9712 5' -59.1 NC_002577.1 + 139249 0.66 0.847994
Target:  5'- gACGUG-CGGCCCGGCU--UCGAgGUg -3'
miRNA:   3'- gUGCGCaGCUGGGCUGGccAGCUgCG- -5'
9712 5' -59.1 NC_002577.1 + 138465 0.68 0.727614
Target:  5'- gACgGCG-CGGCCgCGGCCGG-CgGGCGCc -3'
miRNA:   3'- gUG-CGCaGCUGG-GCUGGCCaG-CUGCG- -5'
9712 5' -59.1 NC_002577.1 + 137644 0.74 0.427404
Target:  5'- -uCGCGUCuACCCGGCCgcugaacgagcuGGUgGACGCu -3'
miRNA:   3'- guGCGCAGcUGGGCUGG------------CCAgCUGCG- -5'
9712 5' -59.1 NC_002577.1 + 137569 0.71 0.582885
Target:  5'- uGCGCG--GACCCGA-CGGUCcgGGCGCg -3'
miRNA:   3'- gUGCGCagCUGGGCUgGCCAG--CUGCG- -5'
9712 5' -59.1 NC_002577.1 + 137444 0.66 0.847994
Target:  5'- --aGCGUCcACCagcucguucagCGGCCGGguaGACGCg -3'
miRNA:   3'- gugCGCAGcUGG-----------GCUGGCCag-CUGCG- -5'
9712 5' -59.1 NC_002577.1 + 129011 0.66 0.855483
Target:  5'- gCGCGCGaCGACgCCGcGCCGucccGUcCGACGUu -3'
miRNA:   3'- -GUGCGCaGCUG-GGC-UGGC----CA-GCUGCG- -5'
9712 5' -59.1 NC_002577.1 + 128743 0.7 0.62169
Target:  5'- gCGCGCGcCGauGCUCGGCCGGUUcuuCGCc -3'
miRNA:   3'- -GUGCGCaGC--UGGGCUGGCCAGcu-GCG- -5'
9712 5' -59.1 NC_002577.1 + 128502 0.68 0.772504
Target:  5'- gCGCGCGUCGcCCUGuccgucCCGGUUGuccuagaACGUg -3'
miRNA:   3'- -GUGCGCAGCuGGGCu-----GGCCAGC-------UGCG- -5'
9712 5' -59.1 NC_002577.1 + 125666 0.69 0.6703
Target:  5'- aGCGCGUaaguacCGGCguuCCGGgCGGUCGGCGa -3'
miRNA:   3'- gUGCGCA------GCUG---GGCUgGCCAGCUGCg -5'
9712 5' -59.1 NC_002577.1 + 123042 0.69 0.718202
Target:  5'- aCGCGCGUCGGUCCGuuucuGCCcuugCGGCGCu -3'
miRNA:   3'- -GUGCGCAGCUGGGC-----UGGcca-GCUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.