Results 1 - 20 of 59 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9712 | 5' | -59.1 | NC_002577.1 | + | 19128 | 1.11 | 0.001693 |
Target: 5'- aCACGCGUCGACCCGACCGGUCGACGCu -3' miRNA: 3'- -GUGCGCAGCUGGGCUGGCCAGCUGCG- -5' |
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9712 | 5' | -59.1 | NC_002577.1 | + | 60222 | 0.67 | 0.78224 |
Target: 5'- --gGCGgCGGCCuCGGgCGGggCGACGCc -3' miRNA: 3'- gugCGCaGCUGG-GCUgGCCa-GCUGCG- -5' |
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9712 | 5' | -59.1 | NC_002577.1 | + | 74785 | 0.67 | 0.824487 |
Target: 5'- gAUuCGUCGGCCCGACCGaucCGGC-Ca -3' miRNA: 3'- gUGcGCAGCUGGGCUGGCca-GCUGcG- -5' |
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9712 | 5' | -59.1 | NC_002577.1 | + | 4603 | 0.66 | 0.855483 |
Target: 5'- gCGCGCGaCGACgCCGcGCCGucccGUcCGACGUu -3' miRNA: 3'- -GUGCGCaGCUG-GGC-UGGC----CA-GCUGCG- -5' |
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9712 | 5' | -59.1 | NC_002577.1 | + | 153594 | 0.72 | 0.51641 |
Target: 5'- gCAaaCGg-GGCCCGGCCGGcgCGACGCa -3' miRNA: 3'- -GUgcGCagCUGGGCUGGCCa-GCUGCG- -5' |
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9712 | 5' | -59.1 | NC_002577.1 | + | 11784 | 0.72 | 0.525741 |
Target: 5'- cCGgGCGaCGACCCGGgcgacgacCCGGgcgaCGACGCg -3' miRNA: 3'- -GUgCGCaGCUGGGCU--------GGCCa---GCUGCG- -5' |
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9712 | 5' | -59.1 | NC_002577.1 | + | 121586 | 0.71 | 0.602247 |
Target: 5'- cCGCGCGcUCGGCgCG-CCGGagcaGGCGCg -3' miRNA: 3'- -GUGCGC-AGCUGgGCuGGCCag--CUGCG- -5' |
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9712 | 5' | -59.1 | NC_002577.1 | + | 4871 | 0.7 | 0.621689 |
Target: 5'- gCGCGCGcCGauGCUCGGCCGGUUcuuCGCc -3' miRNA: 3'- -GUGCGCaGC--UGGGCUGGCCAGcu-GCG- -5' |
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9712 | 5' | -59.1 | NC_002577.1 | + | 97537 | 0.69 | 0.6703 |
Target: 5'- gCGCGCGUCu-CCCGcccagcacggacGCCGaGgCGACGCg -3' miRNA: 3'- -GUGCGCAGcuGGGC------------UGGC-CaGCUGCG- -5' |
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9712 | 5' | -59.1 | NC_002577.1 | + | 5111 | 0.68 | 0.772504 |
Target: 5'- gCGCGCGUCGcCCUGuccgucCCGGUUGuccuagaACGUg -3' miRNA: 3'- -GUGCGCAGCuGGGCu-----GGCCAGC-------UGCG- -5' |
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9712 | 5' | -59.1 | NC_002577.1 | + | 123042 | 0.69 | 0.718202 |
Target: 5'- aCGCGCGUCGGUCCGuuucuGCCcuugCGGCGCu -3' miRNA: 3'- -GUGCGCAGCUGGGC-----UGGcca-GCUGCG- -5' |
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9712 | 5' | -59.1 | NC_002577.1 | + | 125666 | 0.69 | 0.6703 |
Target: 5'- aGCGCGUaaguacCGGCguuCCGGgCGGUCGGCGa -3' miRNA: 3'- gUGCGCA------GCUG---GGCUgGCCAGCUGCg -5' |
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9712 | 5' | -59.1 | NC_002577.1 | + | 98933 | 0.78 | 0.244358 |
Target: 5'- cCGCGUGUgucaaCGACCCGcCuCGGUCGACGUu -3' miRNA: 3'- -GUGCGCA-----GCUGGGCuG-GCCAGCUGCG- -5' |
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9712 | 5' | -59.1 | NC_002577.1 | + | 158872 | 0.68 | 0.727614 |
Target: 5'- gACgGCG-CGGCCgCGGCCGG-CgGGCGCc -3' miRNA: 3'- gUG-CGCaGCUGG-GCUGGCCaG-CUGCG- -5' |
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9712 | 5' | -59.1 | NC_002577.1 | + | 11641 | 0.74 | 0.410704 |
Target: 5'- gACGCGaucgCGACCCGACCGcugaUCcGCGCg -3' miRNA: 3'- gUGCGCa---GCUGGGCUGGCc---AGcUGCG- -5' |
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9712 | 5' | -59.1 | NC_002577.1 | + | 11829 | 0.7 | 0.650889 |
Target: 5'- gACGCGggcgaCGACCCGGgcgccgacCCGGgCGACGa -3' miRNA: 3'- gUGCGCa----GCUGGGCU--------GGCCaGCUGCg -5' |
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9712 | 5' | -59.1 | NC_002577.1 | + | 11868 | 0.68 | 0.746206 |
Target: 5'- cCGgGCGaCGACCCGGgcgacgacCCGGgcgCGgACGCg -3' miRNA: 3'- -GUgCGCaGCUGGGCU--------GGCCa--GC-UGCG- -5' |
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9712 | 5' | -59.1 | NC_002577.1 | + | 141334 | 0.67 | 0.799557 |
Target: 5'- aCGCGCGcCGGUCCaACCGuGgCGACGCc -3' miRNA: 3'- -GUGCGCaGCUGGGcUGGC-CaGCUGCG- -5' |
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9712 | 5' | -59.1 | NC_002577.1 | + | 159693 | 0.74 | 0.427404 |
Target: 5'- -uCGCGUCuACCCGGCCgcugaacgagcuGGUgGACGCu -3' miRNA: 3'- guGCGCAGcUGGGCUGG------------CCAgCUGCG- -5' |
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9712 | 5' | -59.1 | NC_002577.1 | + | 159768 | 0.71 | 0.582885 |
Target: 5'- uGCGCG--GACCCGA-CGGUCcgGGCGCg -3' miRNA: 3'- gUGCGCagCUGGGCUgGCCAG--CUGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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