Results 21 - 40 of 59 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9712 | 5' | -59.1 | NC_002577.1 | + | 4603 | 0.66 | 0.855483 |
Target: 5'- gCGCGCGaCGACgCCGcGCCGucccGUcCGACGUu -3' miRNA: 3'- -GUGCGCaGCUG-GGC-UGGC----CA-GCUGCG- -5' |
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9712 | 5' | -59.1 | NC_002577.1 | + | 74785 | 0.67 | 0.824487 |
Target: 5'- gAUuCGUCGGCCCGACCGaucCGGC-Ca -3' miRNA: 3'- gUGcGCAGCUGGGCUGGCca-GCUGcG- -5' |
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9712 | 5' | -59.1 | NC_002577.1 | + | 102695 | 0.66 | 0.832489 |
Target: 5'- aCGCGCGUCGgcgaACCUcguGACCGGgaauuuaACGCc -3' miRNA: 3'- -GUGCGCAGC----UGGG---CUGGCCagc----UGCG- -5' |
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9712 | 5' | -59.1 | NC_002577.1 | + | 121837 | 0.69 | 0.718202 |
Target: 5'- gCAuCGCGuUCcGCCgGGCCGGUCgGACGg -3' miRNA: 3'- -GU-GCGC-AGcUGGgCUGGCCAG-CUGCg -5' |
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9712 | 5' | -59.1 | NC_002577.1 | + | 158089 | 0.66 | 0.847994 |
Target: 5'- gACGUG-CGGCCCGGCU--UCGAgGUg -3' miRNA: 3'- gUGCGCaGCUGGGCUGGccAGCUgCG- -5' |
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9712 | 5' | -59.1 | NC_002577.1 | + | 97537 | 0.69 | 0.6703 |
Target: 5'- gCGCGCGUCu-CCCGcccagcacggacGCCGaGgCGACGCg -3' miRNA: 3'- -GUGCGCAGcuGGGC------------UGGC-CaGCUGCG- -5' |
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9712 | 5' | -59.1 | NC_002577.1 | + | 125666 | 0.69 | 0.6703 |
Target: 5'- aGCGCGUaaguacCGGCguuCCGGgCGGUCGGCGa -3' miRNA: 3'- gUGCGCA------GCUG---GGCUgGCCAGCUGCg -5' |
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9712 | 5' | -59.1 | NC_002577.1 | + | 155979 | 0.67 | 0.824487 |
Target: 5'- aGCGUGgcCGugccCCCGAcgcCCGGUCGGCaGCc -3' miRNA: 3'- gUGCGCa-GCu---GGGCU---GGCCAGCUG-CG- -5' |
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9712 | 5' | -59.1 | NC_002577.1 | + | 11454 | 0.66 | 0.83249 |
Target: 5'- gGCGCcUCcgcuucuuauGACCgGGCCGGUCGugaggGCGUa -3' miRNA: 3'- gUGCGcAG----------CUGGgCUGGCCAGC-----UGCG- -5' |
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9712 | 5' | -59.1 | NC_002577.1 | + | 121973 | 0.74 | 0.410705 |
Target: 5'- gACGCGaucgCGACCCGACCGcugaUCcGCGCg -3' miRNA: 3'- gUGCGCa---GCUGGGCUGGCc---AGcUGCG- -5' |
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9712 | 5' | -59.1 | NC_002577.1 | + | 137644 | 0.74 | 0.427404 |
Target: 5'- -uCGCGUCuACCCGGCCgcugaacgagcuGGUgGACGCu -3' miRNA: 3'- guGCGCAGcUGGGCUGG------------CCAgCUGCG- -5' |
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9712 | 5' | -59.1 | NC_002577.1 | + | 66367 | 0.67 | 0.78224 |
Target: 5'- -cUGCGUauaUGGCCCgcguggcagGACUGGUCGGgGCa -3' miRNA: 3'- guGCGCA---GCUGGG---------CUGGCCAGCUgCG- -5' |
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9712 | 5' | -59.1 | NC_002577.1 | + | 17574 | 0.67 | 0.78224 |
Target: 5'- gGCGCGaaacgggCGGaggUCCGAUCGGccggCGACGCu -3' miRNA: 3'- gUGCGCa------GCU---GGGCUGGCCa---GCUGCG- -5' |
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9712 | 5' | -59.1 | NC_002577.1 | + | 156004 | 0.67 | 0.799557 |
Target: 5'- aCGCGCGcCGGUCCaACCGuGgCGACGCc -3' miRNA: 3'- -GUGCGCaGCUGGGcUGGC-CaGCUGCG- -5' |
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9712 | 5' | -59.1 | NC_002577.1 | + | 103827 | 0.67 | 0.799557 |
Target: 5'- uCGCGCGUgGGCgCGACUgcuaGGcCGugGUc -3' miRNA: 3'- -GUGCGCAgCUGgGCUGG----CCaGCugCG- -5' |
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9712 | 5' | -59.1 | NC_002577.1 | + | 11776 | 0.69 | 0.718202 |
Target: 5'- gCAuCGCGuUCcGCCgGGCCGGUCgGACGg -3' miRNA: 3'- -GU-GCGC-AGcUGGgCUGGCCAG-CUGCg -5' |
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9712 | 5' | -59.1 | NC_002577.1 | + | 101345 | 0.69 | 0.689599 |
Target: 5'- aACGCcuuuuggaGGCaCCGACCGGUCcACGCc -3' miRNA: 3'- gUGCGcag-----CUG-GGCUGGCCAGcUGCG- -5' |
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9712 | 5' | -59.1 | NC_002577.1 | + | 7948 | 0.69 | 0.670301 |
Target: 5'- aGCGCGUaaguacCGGCguuCCGGgCGGUCGGCGa -3' miRNA: 3'- gUGCGCA------GCUG---GGCUgGCCAGCUGCg -5' |
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9712 | 5' | -59.1 | NC_002577.1 | + | 128743 | 0.7 | 0.62169 |
Target: 5'- gCGCGCGcCGauGCUCGGCCGGUUcuuCGCc -3' miRNA: 3'- -GUGCGCaGC--UGGGCUGGCCAGcu-GCG- -5' |
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9712 | 5' | -59.1 | NC_002577.1 | + | 137569 | 0.71 | 0.582885 |
Target: 5'- uGCGCG--GACCCGA-CGGUCcgGGCGCg -3' miRNA: 3'- gUGCGCagCUGGGCUgGCCAG--CUGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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