Results 1 - 20 of 59 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9712 | 5' | -59.1 | NC_002577.1 | + | 10572 | 0.69 | 0.718202 |
Target: 5'- aCGCGCGUCGGUCCGuuucuGCCcuugCGGCGCu -3' miRNA: 3'- -GUGCGCAGCUGGGC-----UGGcca-GCUGCG- -5' |
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9712 | 5' | -59.1 | NC_002577.1 | + | 156004 | 0.67 | 0.799557 |
Target: 5'- aCGCGCGcCGGUCCaACCGuGgCGACGCc -3' miRNA: 3'- -GUGCGCaGCUGGGcUGGC-CaGCUGCG- -5' |
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9712 | 5' | -59.1 | NC_002577.1 | + | 17574 | 0.67 | 0.78224 |
Target: 5'- gGCGCGaaacgggCGGaggUCCGAUCGGccggCGACGCu -3' miRNA: 3'- gUGCGCa------GCU---GGGCUGGCCa---GCUGCG- -5' |
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9712 | 5' | -59.1 | NC_002577.1 | + | 66367 | 0.67 | 0.78224 |
Target: 5'- -cUGCGUauaUGGCCCgcguggcagGACUGGUCGGgGCa -3' miRNA: 3'- guGCGCA---GCUGGG---------CUGGCCAGCUgCG- -5' |
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9712 | 5' | -59.1 | NC_002577.1 | + | 128502 | 0.68 | 0.772504 |
Target: 5'- gCGCGCGUCGcCCUGuccgucCCGGUUGuccuagaACGUg -3' miRNA: 3'- -GUGCGCAGCuGGGCu-----GGCCAGC-------UGCG- -5' |
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9712 | 5' | -59.1 | NC_002577.1 | + | 121830 | 0.68 | 0.746206 |
Target: 5'- cCGgGCGaCGACCCGGgcgacgacCCGGgcgCGgACGCg -3' miRNA: 3'- -GUgCGCaGCUGGGCU--------GGCCa--GC-UGCG- -5' |
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9712 | 5' | -59.1 | NC_002577.1 | + | 11986 | 0.68 | 0.727614 |
Target: 5'- -cCGCGUCGucGCCCGGgucgucgcCCGgGUCGuCGCc -3' miRNA: 3'- guGCGCAGC--UGGGCU--------GGC-CAGCuGCG- -5' |
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9712 | 5' | -59.1 | NC_002577.1 | + | 12046 | 0.68 | 0.727614 |
Target: 5'- -cCGgGUCGucGCCCGGgucgucgcCCgGGUCGGCGCc -3' miRNA: 3'- guGCgCAGC--UGGGCU--------GG-CCAGCUGCG- -5' |
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9712 | 5' | -59.1 | NC_002577.1 | + | 138465 | 0.68 | 0.727614 |
Target: 5'- gACgGCG-CGGCCgCGGCCGG-CgGGCGCc -3' miRNA: 3'- gUG-CGCaGCUGG-GCUGGCCaG-CUGCG- -5' |
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9712 | 5' | -59.1 | NC_002577.1 | + | 103827 | 0.67 | 0.799557 |
Target: 5'- uCGCGCGUgGGCgCGACUgcuaGGcCGugGUc -3' miRNA: 3'- -GUGCGCAgCUGgGCUGG----CCaGCugCG- -5' |
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9712 | 5' | -59.1 | NC_002577.1 | + | 97647 | 0.67 | 0.815502 |
Target: 5'- gCACGUGUUcauuagaGACCCGACUGG-CGucucugaccACGUg -3' miRNA: 3'- -GUGCGCAG-------CUGGGCUGGCCaGC---------UGCG- -5' |
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9712 | 5' | -59.1 | NC_002577.1 | + | 43000 | 0.67 | 0.816326 |
Target: 5'- gACGCuUCG--CCGAUCGGUgGAUGCu -3' miRNA: 3'- gUGCGcAGCugGGCUGGCCAgCUGCG- -5' |
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9712 | 5' | -59.1 | NC_002577.1 | + | 3610 | 0.66 | 0.855483 |
Target: 5'- gGCGCGaagCGGCUgGgAUCGGgucgCGugGCg -3' miRNA: 3'- gUGCGCa--GCUGGgC-UGGCCa---GCugCG- -5' |
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9712 | 5' | -59.1 | NC_002577.1 | + | 129011 | 0.66 | 0.855483 |
Target: 5'- gCGCGCGaCGACgCCGcGCCGucccGUcCGACGUu -3' miRNA: 3'- -GUGCGCaGCUG-GGC-UGGC----CA-GCUGCG- -5' |
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9712 | 5' | -59.1 | NC_002577.1 | + | 139249 | 0.66 | 0.847994 |
Target: 5'- gACGUG-CGGCCCGGCU--UCGAgGUg -3' miRNA: 3'- gUGCGCaGCUGGGCUGGccAGCUgCG- -5' |
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9712 | 5' | -59.1 | NC_002577.1 | + | 159894 | 0.66 | 0.847994 |
Target: 5'- --aGCGUCcACCagcucguucagCGGCCGGguaGACGCg -3' miRNA: 3'- gugCGCAGcUGG-----------GCUGGCCag-CUGCG- -5' |
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9712 | 5' | -59.1 | NC_002577.1 | + | 20034 | 0.66 | 0.845712 |
Target: 5'- cUACGCGUCGGCgaGugCGG-CGccgaauaccaugccGCGCc -3' miRNA: 3'- -GUGCGCAGCUGggCugGCCaGC--------------UGCG- -5' |
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9712 | 5' | -59.1 | NC_002577.1 | + | 11454 | 0.66 | 0.83249 |
Target: 5'- gGCGCcUCcgcuucuuauGACCgGGCCGGUCGugaggGCGUa -3' miRNA: 3'- gUGCGcAG----------CUGGgCUGGCCAGC-----UGCG- -5' |
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9712 | 5' | -59.1 | NC_002577.1 | + | 12087 | 0.67 | 0.824487 |
Target: 5'- gCGCGCGUgCGcCUCGuCCGcGUCcGCGCc -3' miRNA: 3'- -GUGCGCA-GCuGGGCuGGC-CAGcUGCG- -5' |
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9712 | 5' | -59.1 | NC_002577.1 | + | 141358 | 0.67 | 0.824487 |
Target: 5'- aGCGUGgcCGugccCCCGAcgcCCGGUCGGCaGCc -3' miRNA: 3'- gUGCGCa-GCu---GGGCU---GGCCAGCUG-CG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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