Results 1 - 20 of 50 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
9713 | 3' | -55.9 | NC_002577.1 | + | 46878 | 0.66 | 0.930845 |
Target: 5'- gGGCUCuCAGucGCAuGCGUCUgcaCGCGu -3' miRNA: 3'- -UCGAG-GUUuuCGUcCGCAGAg--GCGCc -5' |
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9713 | 3' | -55.9 | NC_002577.1 | + | 134330 | 0.66 | 0.930845 |
Target: 5'- aAGCguuagaccgCCGAccGCcGGCGgCUCCGCGcGg -3' miRNA: 3'- -UCGa--------GGUUuuCGuCCGCaGAGGCGC-C- -5' |
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9713 | 3' | -55.9 | NC_002577.1 | + | 162998 | 0.66 | 0.930845 |
Target: 5'- aAGCguuagaccgCCGAccGCcGGCGgCUCCGCGcGg -3' miRNA: 3'- -UCGa--------GGUUuuCGuCCGCaGAGGCGC-C- -5' |
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9713 | 3' | -55.9 | NC_002577.1 | + | 77904 | 0.66 | 0.930845 |
Target: 5'- uGGUcacgUCUAaagucGAAGCA-GCGUCcCCGCGGg -3' miRNA: 3'- -UCG----AGGU-----UUUCGUcCGCAGaGGCGCC- -5' |
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9713 | 3' | -55.9 | NC_002577.1 | + | 90558 | 0.66 | 0.925608 |
Target: 5'- cAGCUCCcc--GCAGGCGUaguacaCGCGc -3' miRNA: 3'- -UCGAGGuuuuCGUCCGCAgag---GCGCc -5' |
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9713 | 3' | -55.9 | NC_002577.1 | + | 160358 | 0.66 | 0.925608 |
Target: 5'- cGUUCCGGAAG-AGGCcgcGUCggcgUCCGCGa -3' miRNA: 3'- uCGAGGUUUUCgUCCG---CAG----AGGCGCc -5' |
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9713 | 3' | -55.9 | NC_002577.1 | + | 136979 | 0.66 | 0.925608 |
Target: 5'- cGUUCCGGAAG-AGGCcgcGUCggcgUCCGCGa -3' miRNA: 3'- uCGAGGUUUUCgUCCG---CAG----AGGCGCc -5' |
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9713 | 3' | -55.9 | NC_002577.1 | + | 83704 | 0.66 | 0.925608 |
Target: 5'- gAGcCUCCucggGAGGCAGGaCGUaugcguccucCUCCGCa- -3' miRNA: 3'- -UC-GAGGu---UUUCGUCC-GCA----------GAGGCGcc -5' |
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9713 | 3' | -55.9 | NC_002577.1 | + | 160702 | 0.66 | 0.914423 |
Target: 5'- -uCUCCGGAGGCcauGGCGgagaucgCUCgCGUGGc -3' miRNA: 3'- ucGAGGUUUUCGu--CCGCa------GAG-GCGCC- -5' |
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9713 | 3' | -55.9 | NC_002577.1 | + | 2900 | 0.66 | 0.914423 |
Target: 5'- ---gCCGAGGGUAGGCGUCgagaaaaUCGCGa -3' miRNA: 3'- ucgaGGUUUUCGUCCGCAGa------GGCGCc -5' |
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9713 | 3' | -55.9 | NC_002577.1 | + | 130714 | 0.66 | 0.914423 |
Target: 5'- ---gCCGAGGGUAGGCGUCgagaaaaUCGCGa -3' miRNA: 3'- ucgaGGUUUUCGUCCGCAGa------GGCGCc -5' |
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9713 | 3' | -55.9 | NC_002577.1 | + | 136635 | 0.66 | 0.914423 |
Target: 5'- -uCUCCGGAGGCcauGGCGgagaucgCUCgCGUGGc -3' miRNA: 3'- ucGAGGUUUUCGu--CCGCa------GAG-GCGCC- -5' |
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9713 | 3' | -55.9 | NC_002577.1 | + | 24965 | 0.66 | 0.909082 |
Target: 5'- aGGCggUCCuacucaauucaCGGGCGUCUCCGUGa -3' miRNA: 3'- -UCG--AGGuuuuc------GUCCGCAGAGGCGCc -5' |
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9713 | 3' | -55.9 | NC_002577.1 | + | 48696 | 0.66 | 0.908477 |
Target: 5'- gGGCcCCG--GGCAGGUggaucacgcaGUC-CCGCGGc -3' miRNA: 3'- -UCGaGGUuuUCGUCCG----------CAGaGGCGCC- -5' |
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9713 | 3' | -55.9 | NC_002577.1 | + | 53752 | 0.66 | 0.902297 |
Target: 5'- gAGCgUCCAGAAGU--GCuUCUCCGCcGGu -3' miRNA: 3'- -UCG-AGGUUUUCGucCGcAGAGGCG-CC- -5' |
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9713 | 3' | -55.9 | NC_002577.1 | + | 153244 | 0.66 | 0.902297 |
Target: 5'- gAGUUgCCGGGAGCuuGCGUCUUC-CGGu -3' miRNA: 3'- -UCGA-GGUUUUCGucCGCAGAGGcGCC- -5' |
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9713 | 3' | -55.9 | NC_002577.1 | + | 162243 | 0.66 | 0.902297 |
Target: 5'- uAGCg-CAGAAGCGccGGCGagC-CCGCGGg -3' miRNA: 3'- -UCGagGUUUUCGU--CCGCa-GaGGCGCC- -5' |
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9713 | 3' | -55.9 | NC_002577.1 | + | 135085 | 0.66 | 0.902297 |
Target: 5'- uAGCg-CAGAAGCGccGGCGagC-CCGCGGg -3' miRNA: 3'- -UCGagGUUUUCGU--CCGCa-GaGGCGCC- -5' |
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9713 | 3' | -55.9 | NC_002577.1 | + | 157051 | 0.67 | 0.889246 |
Target: 5'- cGCUCCGgaggGGAGCGGGUG-CgagGCGGg -3' miRNA: 3'- uCGAGGU----UUUCGUCCGCaGaggCGCC- -5' |
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9713 | 3' | -55.9 | NC_002577.1 | + | 140287 | 0.67 | 0.889246 |
Target: 5'- cGCUCCGgaggGGAGCGGGUG-CgagGCGGg -3' miRNA: 3'- uCGAGGU----UUUCGUCCGCaGaggCGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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