miRNA display CGI


Results 21 - 40 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9713 3' -55.9 NC_002577.1 + 147711 0.67 0.882382
Target:  5'- aAGUUCCuguacuGGUGGaGCGUCggCGCGGg -3'
miRNA:   3'- -UCGAGGuuu---UCGUC-CGCAGagGCGCC- -5'
9713 3' -55.9 NC_002577.1 + 157499 0.67 0.882382
Target:  5'- cGGCUCCuggggcAGCGGGCGaccUUUCGCGc -3'
miRNA:   3'- -UCGAGGuuu---UCGUCCGCa--GAGGCGCc -5'
9713 3' -55.9 NC_002577.1 + 139838 0.67 0.882382
Target:  5'- cGGCUCCuggggcAGCGGGCGaccUUUCGCGc -3'
miRNA:   3'- -UCGAGGuuu---UCGUCCGCa--GAGGCGCc -5'
9713 3' -55.9 NC_002577.1 + 12103 0.67 0.875298
Target:  5'- cGGCgcgCC-GGAGCAGGCGcgcgugcgccUCgUCCGCGu -3'
miRNA:   3'- -UCGa--GGuUUUCGUCCGC----------AG-AGGCGCc -5'
9713 3' -55.9 NC_002577.1 + 162810 0.67 0.875298
Target:  5'- -uCUCCGAAAGCucccGGGgGUCcCCGaCGGc -3'
miRNA:   3'- ucGAGGUUUUCG----UCCgCAGaGGC-GCC- -5'
9713 3' -55.9 NC_002577.1 + 158463 0.67 0.875298
Target:  5'- cGUUCCAGAcuGGaaCGGGcCGUCUCCGaggcCGGg -3'
miRNA:   3'- uCGAGGUUU--UC--GUCC-GCAGAGGC----GCC- -5'
9713 3' -55.9 NC_002577.1 + 138875 0.67 0.875298
Target:  5'- cGUUCCAGAcuGGaaCGGGcCGUCUCCGaggcCGGg -3'
miRNA:   3'- uCGAGGUUU--UC--GUCC-GCAGAGGC----GCC- -5'
9713 3' -55.9 NC_002577.1 + 134518 0.67 0.875298
Target:  5'- -uCUCCGAAAGCucccGGGgGUCcCCGaCGGc -3'
miRNA:   3'- ucGAGGUUUUCG----UCCgCAGaGGC-GCC- -5'
9713 3' -55.9 NC_002577.1 + 121595 0.67 0.875298
Target:  5'- cGGCgcgCC-GGAGCAGGCGcgcgugcgccUCgUCCGCGu -3'
miRNA:   3'- -UCGa--GGuUUUCGUCCGC----------AG-AGGCGCc -5'
9713 3' -55.9 NC_002577.1 + 9583 0.67 0.870944
Target:  5'- cGCUCCAAAAG-AGaGCGUUccguuugacggagcCCGCGGu -3'
miRNA:   3'- uCGAGGUUUUCgUC-CGCAGa-------------GGCGCC- -5'
9713 3' -55.9 NC_002577.1 + 124031 0.67 0.870944
Target:  5'- cGCUCCAAAAG-AGaGCGUUccguuugacggagcCCGCGGu -3'
miRNA:   3'- uCGAGGUUUUCgUC-CGCAGa-------------GGCGCC- -5'
9713 3' -55.9 NC_002577.1 + 158840 0.67 0.860489
Target:  5'- cGCUgCCAGAGGCc-GCGg--CCGCGGc -3'
miRNA:   3'- uCGA-GGUUUUCGucCGCagaGGCGCC- -5'
9713 3' -55.9 NC_002577.1 + 122649 0.67 0.860489
Target:  5'- cGGCUCgCGuucGCGGGgGUCgCCGaCGGg -3'
miRNA:   3'- -UCGAG-GUuuuCGUCCgCAGaGGC-GCC- -5'
9713 3' -55.9 NC_002577.1 + 10965 0.67 0.860489
Target:  5'- cGGCUCgCGuucGCGGGgGUCgCCGaCGGg -3'
miRNA:   3'- -UCGAG-GUuuuCGUCCgCAGaGGC-GCC- -5'
9713 3' -55.9 NC_002577.1 + 138497 0.67 0.860489
Target:  5'- cGCUgCCAGAGGCc-GCGg--CCGCGGc -3'
miRNA:   3'- uCGA-GGUUUUCGucCGCagaGGCGCC- -5'
9713 3' -55.9 NC_002577.1 + 10569 0.68 0.844861
Target:  5'- uGUUCCGcGAGC-GGCGUUcggCCGCGu -3'
miRNA:   3'- uCGAGGUuUUCGuCCGCAGa--GGCGCc -5'
9713 3' -55.9 NC_002577.1 + 123045 0.68 0.844861
Target:  5'- uGUUCCGcGAGC-GGCGUUcggCCGCGu -3'
miRNA:   3'- uCGAGGUuUUCGuCCGCAGa--GGCGCc -5'
9713 3' -55.9 NC_002577.1 + 138930 0.68 0.836757
Target:  5'- uGCgggaCGAGAGCcgugGGGCGUC-CCGcCGGg -3'
miRNA:   3'- uCGag--GUUUUCG----UCCGCAGaGGC-GCC- -5'
9713 3' -55.9 NC_002577.1 + 158407 0.68 0.836757
Target:  5'- uGCgggaCGAGAGCcgugGGGCGUC-CCGcCGGg -3'
miRNA:   3'- uCGag--GUUUUCG----UCCGCAGaGGC-GCC- -5'
9713 3' -55.9 NC_002577.1 + 101316 0.69 0.784526
Target:  5'- cGgUCCGAu-GCGGGCGaaggCUCCGCa- -3'
miRNA:   3'- uCgAGGUUuuCGUCCGCa---GAGGCGcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.