Results 1 - 20 of 50 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9713 | 3' | -55.9 | NC_002577.1 | + | 26085 | 1.11 | 0.00228 |
Target: 5'- cAGCUCCAAAAGCAGGCGUCUCCGCGGg -3' miRNA: 3'- -UCGAGGUUUUCGUCCGCAGAGGCGCC- -5' |
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9713 | 3' | -55.9 | NC_002577.1 | + | 147711 | 0.67 | 0.882382 |
Target: 5'- aAGUUCCuguacuGGUGGaGCGUCggCGCGGg -3' miRNA: 3'- -UCGAGGuuu---UCGUC-CGCAGagGCGCC- -5' |
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9713 | 3' | -55.9 | NC_002577.1 | + | 162243 | 0.66 | 0.902297 |
Target: 5'- uAGCg-CAGAAGCGccGGCGagC-CCGCGGg -3' miRNA: 3'- -UCGagGUUUUCGU--CCGCa-GaGGCGCC- -5' |
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9713 | 3' | -55.9 | NC_002577.1 | + | 162998 | 0.66 | 0.930845 |
Target: 5'- aAGCguuagaccgCCGAccGCcGGCGgCUCCGCGcGg -3' miRNA: 3'- -UCGa--------GGUUuuCGuCCGCaGAGGCGC-C- -5' |
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9713 | 3' | -55.9 | NC_002577.1 | + | 23371 | 0.71 | 0.687601 |
Target: 5'- cGCUCUAu--GCAGGCGUCgCgGcCGGa -3' miRNA: 3'- uCGAGGUuuuCGUCCGCAGaGgC-GCC- -5' |
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9713 | 3' | -55.9 | NC_002577.1 | + | 80883 | 0.71 | 0.697647 |
Target: 5'- gAGCUgCGAuGGCuguauuGGCGUCUCuCGCGc -3' miRNA: 3'- -UCGAgGUUuUCGu-----CCGCAGAG-GCGCc -5' |
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9713 | 3' | -55.9 | NC_002577.1 | + | 101316 | 0.69 | 0.784526 |
Target: 5'- cGgUCCGAu-GCGGGCGaaggCUCCGCa- -3' miRNA: 3'- uCgAGGUUuuCGUCCGCa---GAGGCGcc -5' |
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9713 | 3' | -55.9 | NC_002577.1 | + | 138930 | 0.68 | 0.836757 |
Target: 5'- uGCgggaCGAGAGCcgugGGGCGUC-CCGcCGGg -3' miRNA: 3'- uCGag--GUUUUCG----UCCGCAGaGGC-GCC- -5' |
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9713 | 3' | -55.9 | NC_002577.1 | + | 122649 | 0.67 | 0.860489 |
Target: 5'- cGGCUCgCGuucGCGGGgGUCgCCGaCGGg -3' miRNA: 3'- -UCGAG-GUuuuCGUCCgCAGaGGC-GCC- -5' |
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9713 | 3' | -55.9 | NC_002577.1 | + | 139838 | 0.67 | 0.882382 |
Target: 5'- cGGCUCCuggggcAGCGGGCGaccUUUCGCGc -3' miRNA: 3'- -UCGAGGuuu---UCGUCCGCa--GAGGCGCc -5' |
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9713 | 3' | -55.9 | NC_002577.1 | + | 158463 | 0.67 | 0.875298 |
Target: 5'- cGUUCCAGAcuGGaaCGGGcCGUCUCCGaggcCGGg -3' miRNA: 3'- uCGAGGUUU--UC--GUCC-GCAGAGGC----GCC- -5' |
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9713 | 3' | -55.9 | NC_002577.1 | + | 158840 | 0.67 | 0.860489 |
Target: 5'- cGCUgCCAGAGGCc-GCGg--CCGCGGc -3' miRNA: 3'- uCGA-GGUUUUCGucCGCagaGGCGCC- -5' |
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9713 | 3' | -55.9 | NC_002577.1 | + | 128806 | 0.74 | 0.525162 |
Target: 5'- cGUUCCAAAcgucggacgggacGGCGcGGCGUCgucgcgcgCCGCGGa -3' miRNA: 3'- uCGAGGUUU-------------UCGU-CCGCAGa-------GGCGCC- -5' |
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9713 | 3' | -55.9 | NC_002577.1 | + | 121595 | 0.67 | 0.875298 |
Target: 5'- cGGCgcgCC-GGAGCAGGCGcgcgugcgccUCgUCCGCGu -3' miRNA: 3'- -UCGa--GGuUUUCGUCCGC----------AG-AGGCGCc -5' |
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9713 | 3' | -55.9 | NC_002577.1 | + | 8046 | 0.72 | 0.606301 |
Target: 5'- cGCUCCGGGccggagaggcuGGCGGGCGggucUCUCCGUa- -3' miRNA: 3'- uCGAGGUUU-----------UCGUCCGC----AGAGGCGcc -5' |
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9713 | 3' | -55.9 | NC_002577.1 | + | 10569 | 0.68 | 0.844861 |
Target: 5'- uGUUCCGcGAGC-GGCGUUcggCCGCGu -3' miRNA: 3'- uCGAGGUuUUCGuCCGCAGa--GGCGCc -5' |
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9713 | 3' | -55.9 | NC_002577.1 | + | 134518 | 0.67 | 0.875298 |
Target: 5'- -uCUCCGAAAGCucccGGGgGUCcCCGaCGGc -3' miRNA: 3'- ucGAGGUUUUCG----UCCgCAGaGGC-GCC- -5' |
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9713 | 3' | -55.9 | NC_002577.1 | + | 140287 | 0.67 | 0.889246 |
Target: 5'- cGCUCCGgaggGGAGCGGGUG-CgagGCGGg -3' miRNA: 3'- uCGAGGU----UUUCGUCCGCaGaggCGCC- -5' |
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9713 | 3' | -55.9 | NC_002577.1 | + | 160195 | 0.72 | 0.616478 |
Target: 5'- --gUCCGAGGGCcGGuCGcgCUCCGCGGa -3' miRNA: 3'- ucgAGGUUUUCGuCC-GCa-GAGGCGCC- -5' |
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9713 | 3' | -55.9 | NC_002577.1 | + | 113055 | 0.7 | 0.727423 |
Target: 5'- uAGCUCUGAAAGCcagGGGgGUugacauuaacgaCUCUGCGGc -3' miRNA: 3'- -UCGAGGUUUUCG---UCCgCA------------GAGGCGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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