miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9713 3' -55.9 NC_002577.1 + 137143 0.72 0.616478
Target:  5'- --gUCCGAGGGCcGGuCGcgCUCCGCGGa -3'
miRNA:   3'- ucgAGGUUUUCGuCC-GCa-GAGGCGCC- -5'
9713 3' -55.9 NC_002577.1 + 12103 0.67 0.875298
Target:  5'- cGGCgcgCC-GGAGCAGGCGcgcgugcgccUCgUCCGCGu -3'
miRNA:   3'- -UCGa--GGuUUUCGUCCGC----------AG-AGGCGCc -5'
9713 3' -55.9 NC_002577.1 + 162810 0.67 0.875298
Target:  5'- -uCUCCGAAAGCucccGGGgGUCcCCGaCGGc -3'
miRNA:   3'- ucGAGGUUUUCG----UCCgCAGaGGC-GCC- -5'
9713 3' -55.9 NC_002577.1 + 138875 0.67 0.875298
Target:  5'- cGUUCCAGAcuGGaaCGGGcCGUCUCCGaggcCGGg -3'
miRNA:   3'- uCGAGGUUU--UC--GUCC-GCAGAGGC----GCC- -5'
9713 3' -55.9 NC_002577.1 + 124031 0.67 0.870944
Target:  5'- cGCUCCAAAAG-AGaGCGUUccguuugacggagcCCGCGGu -3'
miRNA:   3'- uCGAGGUUUUCgUC-CGCAGa-------------GGCGCC- -5'
9713 3' -55.9 NC_002577.1 + 10965 0.67 0.860489
Target:  5'- cGGCUCgCGuucGCGGGgGUCgCCGaCGGg -3'
miRNA:   3'- -UCGAG-GUuuuCGUCCgCAGaGGC-GCC- -5'
9713 3' -55.9 NC_002577.1 + 138497 0.67 0.860489
Target:  5'- cGCUgCCAGAGGCc-GCGg--CCGCGGc -3'
miRNA:   3'- uCGA-GGUUUUCGucCGCagaGGCGCC- -5'
9713 3' -55.9 NC_002577.1 + 123045 0.68 0.844861
Target:  5'- uGUUCCGcGAGC-GGCGUUcggCCGCGu -3'
miRNA:   3'- uCGAGGUuUUCGuCCGCAGa--GGCGCc -5'
9713 3' -55.9 NC_002577.1 + 158407 0.68 0.836757
Target:  5'- uGCgggaCGAGAGCcgugGGGCGUC-CCGcCGGg -3'
miRNA:   3'- uCGag--GUUUUCG----UCCGCAGaGGC-GCC- -5'
9713 3' -55.9 NC_002577.1 + 157499 0.67 0.882382
Target:  5'- cGGCUCCuggggcAGCGGGCGaccUUUCGCGc -3'
miRNA:   3'- -UCGAGGuuu---UCGUCCGCa--GAGGCGCc -5'
9713 3' -55.9 NC_002577.1 + 157051 0.67 0.889246
Target:  5'- cGCUCCGgaggGGAGCGGGUG-CgagGCGGg -3'
miRNA:   3'- uCGAGGU----UUUCGUCCGCaGaggCGCC- -5'
9713 3' -55.9 NC_002577.1 + 135085 0.66 0.902297
Target:  5'- uAGCg-CAGAAGCGccGGCGagC-CCGCGGg -3'
miRNA:   3'- -UCGagGUUUUCGU--CCGCa-GaGGCGCC- -5'
9713 3' -55.9 NC_002577.1 + 134330 0.66 0.930845
Target:  5'- aAGCguuagaccgCCGAccGCcGGCGgCUCCGCGcGg -3'
miRNA:   3'- -UCGa--------GGUUuuCGuCCGCaGAGGCGC-C- -5'
9713 3' -55.9 NC_002577.1 + 90558 0.66 0.925608
Target:  5'- cAGCUCCcc--GCAGGCGUaguacaCGCGc -3'
miRNA:   3'- -UCGAGGuuuuCGUCCGCAgag---GCGCc -5'
9713 3' -55.9 NC_002577.1 + 160358 0.66 0.925608
Target:  5'- cGUUCCGGAAG-AGGCcgcGUCggcgUCCGCGa -3'
miRNA:   3'- uCGAGGUUUUCgUCCG---CAG----AGGCGCc -5'
9713 3' -55.9 NC_002577.1 + 136635 0.66 0.914423
Target:  5'- -uCUCCGGAGGCcauGGCGgagaucgCUCgCGUGGc -3'
miRNA:   3'- ucGAGGUUUUCGu--CCGCa------GAG-GCGCC- -5'
9713 3' -55.9 NC_002577.1 + 130714 0.66 0.914423
Target:  5'- ---gCCGAGGGUAGGCGUCgagaaaaUCGCGa -3'
miRNA:   3'- ucgaGGUUUUCGUCCGCAGa------GGCGCc -5'
9713 3' -55.9 NC_002577.1 + 48696 0.66 0.908477
Target:  5'- gGGCcCCG--GGCAGGUggaucacgcaGUC-CCGCGGc -3'
miRNA:   3'- -UCGaGGUuuUCGUCCG----------CAGaGGCGCC- -5'
9713 3' -55.9 NC_002577.1 + 153244 0.66 0.902297
Target:  5'- gAGUUgCCGGGAGCuuGCGUCUUC-CGGu -3'
miRNA:   3'- -UCGA-GGUUUUCGucCGCAGAGGcGCC- -5'
9713 3' -55.9 NC_002577.1 + 53752 0.66 0.902297
Target:  5'- gAGCgUCCAGAAGU--GCuUCUCCGCcGGu -3'
miRNA:   3'- -UCG-AGGUUUUCGucCGcAGAGGCG-CC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.