miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9713 5' -55.4 NC_002577.1 + 154539 0.66 0.931774
Target:  5'- cAGUCGCGGuuUCACGGGCcCcUUGggUg -3'
miRNA:   3'- -UCGGCGCC--AGUGCUCGaGaAGCuuGu -5'
9713 5' -55.4 NC_002577.1 + 122737 0.66 0.926561
Target:  5'- gGGCCGCGacccUCGCGGGUcCggaaccgUCGGACGu -3'
miRNA:   3'- -UCGGCGCc---AGUGCUCGaGa------AGCUUGU- -5'
9713 5' -55.4 NC_002577.1 + 51141 0.66 0.92111
Target:  5'- uGCCGgGGUC-CGuGCUCg--GGGCAa -3'
miRNA:   3'- uCGGCgCCAGuGCuCGAGaagCUUGU- -5'
9713 5' -55.4 NC_002577.1 + 158849 0.66 0.92111
Target:  5'- aGGCCGCGGcCGCG-GCcgCggaGGACGg -3'
miRNA:   3'- -UCGGCGCCaGUGCuCGa-GaagCUUGU- -5'
9713 5' -55.4 NC_002577.1 + 138488 0.66 0.92111
Target:  5'- aGGCCGCGGcCGCG-GCcgCggaGGACGg -3'
miRNA:   3'- -UCGGCGCCaGUGCuCGa-GaagCUUGU- -5'
9713 5' -55.4 NC_002577.1 + 159030 0.67 0.903329
Target:  5'- cGGCCGCGGcCGCGGcCUCUggcaGcGCAu -3'
miRNA:   3'- -UCGGCGCCaGUGCUcGAGAag--CuUGU- -5'
9713 5' -55.4 NC_002577.1 + 142516 0.67 0.903329
Target:  5'- -aCCGCGGUCACGucuccCUUUcCGAACGc -3'
miRNA:   3'- ucGGCGCCAGUGCuc---GAGAaGCUUGU- -5'
9713 5' -55.4 NC_002577.1 + 138308 0.67 0.903329
Target:  5'- cGGCCGCGGcCGCGGcCUCUggcaGcGCAu -3'
miRNA:   3'- -UCGGCGCCaGUGCUcGAGAag--CuUGU- -5'
9713 5' -55.4 NC_002577.1 + 10942 0.67 0.890306
Target:  5'- -aCCGCGGUCcCGcGCUU-UCGGACGg -3'
miRNA:   3'- ucGGCGCCAGuGCuCGAGaAGCUUGU- -5'
9713 5' -55.4 NC_002577.1 + 122672 0.67 0.890306
Target:  5'- -aCCGCGGUCcCGcGCUU-UCGGACGg -3'
miRNA:   3'- ucGGCGCCAGuGCuCGAGaAGCUUGU- -5'
9713 5' -55.4 NC_002577.1 + 108245 0.67 0.890306
Target:  5'- -cUCGUGGagUCGCGAGCUaCUUCGAuCGa -3'
miRNA:   3'- ucGGCGCC--AGUGCUCGA-GAAGCUuGU- -5'
9713 5' -55.4 NC_002577.1 + 47061 0.67 0.883452
Target:  5'- uGGUCGCgucgaaGGUCACGuuaccGGCUgUUCGAAUg -3'
miRNA:   3'- -UCGGCG------CCAGUGC-----UCGAgAAGCUUGu -5'
9713 5' -55.4 NC_002577.1 + 154651 0.68 0.869082
Target:  5'- -aCCGCGGUCACGucucucccggcuAGCUC--CGAGCc -3'
miRNA:   3'- ucGGCGCCAGUGC------------UCGAGaaGCUUGu -5'
9713 5' -55.4 NC_002577.1 + 154736 0.68 0.869082
Target:  5'- uGgCGUGGcCACGAGCUCUguuugCGGcCAc -3'
miRNA:   3'- uCgGCGCCaGUGCUCGAGAa----GCUuGU- -5'
9713 5' -55.4 NC_002577.1 + 142686 0.68 0.869082
Target:  5'- -aCCGCGGUCACGucucucccggcuAGCUC--CGAGCc -3'
miRNA:   3'- ucGGCGCCAGUGC------------UCGAGaaGCUUGu -5'
9713 5' -55.4 NC_002577.1 + 75311 0.69 0.821072
Target:  5'- cGCCGC-GUCGCGAGgUUUUaGAGCGg -3'
miRNA:   3'- uCGGCGcCAGUGCUCgAGAAgCUUGU- -5'
9713 5' -55.4 NC_002577.1 + 104844 0.69 0.794653
Target:  5'- gAGCCgGCGGUCAUGAGga--UCGAACc -3'
miRNA:   3'- -UCGG-CGCCAGUGCUCgagaAGCUUGu -5'
9713 5' -55.4 NC_002577.1 + 48238 0.71 0.698438
Target:  5'- -uCCGCGGUCuCGAGCUCUagcUUGggUc -3'
miRNA:   3'- ucGGCGCCAGuGCUCGAGA---AGCuuGu -5'
9713 5' -55.4 NC_002577.1 + 89327 0.75 0.497132
Target:  5'- cGCCGUGGUCAaGGGCUCUcaagaGAGCGc -3'
miRNA:   3'- uCGGCGCCAGUgCUCGAGAag---CUUGU- -5'
9713 5' -55.4 NC_002577.1 + 26119 1.08 0.004003
Target:  5'- aAGCCGCGGUCACGAGCUCUUCGAACAc -3'
miRNA:   3'- -UCGGCGCCAGUGCUCGAGAAGCUUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.