Results 1 - 20 of 20 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
9713 | 5' | -55.4 | NC_002577.1 | + | 154539 | 0.66 | 0.931774 |
Target: 5'- cAGUCGCGGuuUCACGGGCcCcUUGggUg -3' miRNA: 3'- -UCGGCGCC--AGUGCUCGaGaAGCuuGu -5' |
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9713 | 5' | -55.4 | NC_002577.1 | + | 158849 | 0.66 | 0.92111 |
Target: 5'- aGGCCGCGGcCGCG-GCcgCggaGGACGg -3' miRNA: 3'- -UCGGCGCCaGUGCuCGa-GaagCUUGU- -5' |
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9713 | 5' | -55.4 | NC_002577.1 | + | 51141 | 0.66 | 0.92111 |
Target: 5'- uGCCGgGGUC-CGuGCUCg--GGGCAa -3' miRNA: 3'- uCGGCgCCAGuGCuCGAGaagCUUGU- -5' |
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9713 | 5' | -55.4 | NC_002577.1 | + | 122737 | 0.66 | 0.926561 |
Target: 5'- gGGCCGCGacccUCGCGGGUcCggaaccgUCGGACGu -3' miRNA: 3'- -UCGGCGCc---AGUGCUCGaGa------AGCUUGU- -5' |
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9713 | 5' | -55.4 | NC_002577.1 | + | 138488 | 0.66 | 0.92111 |
Target: 5'- aGGCCGCGGcCGCG-GCcgCggaGGACGg -3' miRNA: 3'- -UCGGCGCCaGUGCuCGa-GaagCUUGU- -5' |
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9713 | 5' | -55.4 | NC_002577.1 | + | 108245 | 0.67 | 0.890306 |
Target: 5'- -cUCGUGGagUCGCGAGCUaCUUCGAuCGa -3' miRNA: 3'- ucGGCGCC--AGUGCUCGA-GAAGCUuGU- -5' |
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9713 | 5' | -55.4 | NC_002577.1 | + | 159030 | 0.67 | 0.903329 |
Target: 5'- cGGCCGCGGcCGCGGcCUCUggcaGcGCAu -3' miRNA: 3'- -UCGGCGCCaGUGCUcGAGAag--CuUGU- -5' |
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9713 | 5' | -55.4 | NC_002577.1 | + | 142516 | 0.67 | 0.903329 |
Target: 5'- -aCCGCGGUCACGucuccCUUUcCGAACGc -3' miRNA: 3'- ucGGCGCCAGUGCuc---GAGAaGCUUGU- -5' |
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9713 | 5' | -55.4 | NC_002577.1 | + | 138308 | 0.67 | 0.903329 |
Target: 5'- cGGCCGCGGcCGCGGcCUCUggcaGcGCAu -3' miRNA: 3'- -UCGGCGCCaGUGCUcGAGAag--CuUGU- -5' |
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9713 | 5' | -55.4 | NC_002577.1 | + | 10942 | 0.67 | 0.890306 |
Target: 5'- -aCCGCGGUCcCGcGCUU-UCGGACGg -3' miRNA: 3'- ucGGCGCCAGuGCuCGAGaAGCUUGU- -5' |
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9713 | 5' | -55.4 | NC_002577.1 | + | 122672 | 0.67 | 0.890306 |
Target: 5'- -aCCGCGGUCcCGcGCUU-UCGGACGg -3' miRNA: 3'- ucGGCGCCAGuGCuCGAGaAGCUUGU- -5' |
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9713 | 5' | -55.4 | NC_002577.1 | + | 47061 | 0.67 | 0.883452 |
Target: 5'- uGGUCGCgucgaaGGUCACGuuaccGGCUgUUCGAAUg -3' miRNA: 3'- -UCGGCG------CCAGUGC-----UCGAgAAGCUUGu -5' |
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9713 | 5' | -55.4 | NC_002577.1 | + | 154651 | 0.68 | 0.869082 |
Target: 5'- -aCCGCGGUCACGucucucccggcuAGCUC--CGAGCc -3' miRNA: 3'- ucGGCGCCAGUGC------------UCGAGaaGCUUGu -5' |
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9713 | 5' | -55.4 | NC_002577.1 | + | 154736 | 0.68 | 0.869082 |
Target: 5'- uGgCGUGGcCACGAGCUCUguuugCGGcCAc -3' miRNA: 3'- uCgGCGCCaGUGCUCGAGAa----GCUuGU- -5' |
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9713 | 5' | -55.4 | NC_002577.1 | + | 142686 | 0.68 | 0.869082 |
Target: 5'- -aCCGCGGUCACGucucucccggcuAGCUC--CGAGCc -3' miRNA: 3'- ucGGCGCCAGUGC------------UCGAGaaGCUUGu -5' |
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9713 | 5' | -55.4 | NC_002577.1 | + | 104844 | 0.69 | 0.794653 |
Target: 5'- gAGCCgGCGGUCAUGAGga--UCGAACc -3' miRNA: 3'- -UCGG-CGCCAGUGCUCgagaAGCUUGu -5' |
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9713 | 5' | -55.4 | NC_002577.1 | + | 75311 | 0.69 | 0.821072 |
Target: 5'- cGCCGC-GUCGCGAGgUUUUaGAGCGg -3' miRNA: 3'- uCGGCGcCAGUGCUCgAGAAgCUUGU- -5' |
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9713 | 5' | -55.4 | NC_002577.1 | + | 48238 | 0.71 | 0.698438 |
Target: 5'- -uCCGCGGUCuCGAGCUCUagcUUGggUc -3' miRNA: 3'- ucGGCGCCAGuGCUCGAGA---AGCuuGu -5' |
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9713 | 5' | -55.4 | NC_002577.1 | + | 89327 | 0.75 | 0.497132 |
Target: 5'- cGCCGUGGUCAaGGGCUCUcaagaGAGCGc -3' miRNA: 3'- uCGGCGCCAGUgCUCGAGAag---CUUGU- -5' |
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9713 | 5' | -55.4 | NC_002577.1 | + | 26119 | 1.08 | 0.004003 |
Target: 5'- aAGCCGCGGUCACGAGCUCUUCGAACAc -3' miRNA: 3'- -UCGGCGCCAGUGCUCGAGAAGCUUGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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