miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9714 3' -51 NC_002577.1 + 16689 0.66 0.993045
Target:  5'- cGCgCGGUUcagUagUCGCGCUGCgcaauGGUCGg -3'
miRNA:   3'- uUG-GUCAAa--AagAGCGCGACG-----UCAGC- -5'
9714 3' -51 NC_002577.1 + 60456 0.66 0.993045
Target:  5'- uACCuGUUUUUCUCcgGCGUcGCcGUCGu -3'
miRNA:   3'- uUGGuCAAAAAGAG--CGCGaCGuCAGC- -5'
9714 3' -51 NC_002577.1 + 85739 0.66 0.993045
Target:  5'- uGCCAGaUUggCUCGC-CUGCAGaauUCGc -3'
miRNA:   3'- uUGGUCaAAaaGAGCGcGACGUC---AGC- -5'
9714 3' -51 NC_002577.1 + 4643 0.66 0.991982
Target:  5'- aGGCCGGg----C-CGCGCUGCAGg-- -3'
miRNA:   3'- -UUGGUCaaaaaGaGCGCGACGUCagc -5'
9714 3' -51 NC_002577.1 + 128970 0.66 0.991982
Target:  5'- aGGCCGGg----C-CGCGCUGCAGg-- -3'
miRNA:   3'- -UUGGUCaaaaaGaGCGCGACGUCagc -5'
9714 3' -51 NC_002577.1 + 108544 0.67 0.98265
Target:  5'- gGGCUGGUUauacgUCUgGCGCUcguGCAGUUGg -3'
miRNA:   3'- -UUGGUCAAaa---AGAgCGCGA---CGUCAGC- -5'
9714 3' -51 NC_002577.1 + 147199 0.68 0.972934
Target:  5'- gAACCA-----UCUCGCGCaaGUAGUCGa -3'
miRNA:   3'- -UUGGUcaaaaAGAGCGCGa-CGUCAGC- -5'
9714 3' -51 NC_002577.1 + 135235 0.7 0.927364
Target:  5'- cGGCuCGGUUgcgUUC-CGCGCUGuUAGUCGu -3'
miRNA:   3'- -UUG-GUCAAa--AAGaGCGCGAC-GUCAGC- -5'
9714 3' -51 NC_002577.1 + 162093 0.7 0.927364
Target:  5'- cGGCuCGGUUgcgUUC-CGCGCUGuUAGUCGu -3'
miRNA:   3'- -UUG-GUCAAa--AAGaGCGCGAC-GUCAGC- -5'
9714 3' -51 NC_002577.1 + 45012 0.75 0.697892
Target:  5'- gAugCGGcacgUUCgCGCGCUGCGGUCGa -3'
miRNA:   3'- -UugGUCaaa-AAGaGCGCGACGUCAGC- -5'
9714 3' -51 NC_002577.1 + 26675 1.08 0.009874
Target:  5'- cAACCAGUUUUUCUCGCGCUGCAGUCGa -3'
miRNA:   3'- -UUGGUCAAAAAGAGCGCGACGUCAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.