miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9714 5' -57 NC_002577.1 + 11111 0.66 0.916155
Target:  5'- cCGCGGUaauaaaGCGCccGCCGucGcgGAUCGGa -3'
miRNA:   3'- -GCGCCG------CGCGu-UGGCccUuaCUAGCC- -5'
9714 5' -57 NC_002577.1 + 122503 0.66 0.916155
Target:  5'- cCGCGGUaauaaaGCGCccGCCGucGcgGAUCGGa -3'
miRNA:   3'- -GCGCCG------CGCGu-UGGCccUuaCUAGCC- -5'
9714 5' -57 NC_002577.1 + 10690 0.66 0.904445
Target:  5'- cCGCGGCGagguCGgAACCucGGGAAUcGAUUGa -3'
miRNA:   3'- -GCGCCGC----GCgUUGG--CCCUUA-CUAGCc -5'
9714 5' -57 NC_002577.1 + 122923 0.66 0.904445
Target:  5'- cCGCGGCGagguCGgAACCucGGGAAUcGAUUGa -3'
miRNA:   3'- -GCGCCGC----GCgUUGG--CCCUUA-CUAGCc -5'
9714 5' -57 NC_002577.1 + 143946 0.66 0.898256
Target:  5'- gCGCGGa--GCAAUCGGGGggGGggGGg -3'
miRNA:   3'- -GCGCCgcgCGUUGGCCCUuaCUagCC- -5'
9714 5' -57 NC_002577.1 + 157797 0.66 0.898256
Target:  5'- gGCGuGCGCGCcgccGCCGGGcg----CGGg -3'
miRNA:   3'- gCGC-CGCGCGu---UGGCCCuuacuaGCC- -5'
9714 5' -57 NC_002577.1 + 8448 0.66 0.898256
Target:  5'- cCGCGGUGUGUguggggguGugUGGGggUGugugUGGg -3'
miRNA:   3'- -GCGCCGCGCG--------UugGCCCuuACua--GCC- -5'
9714 5' -57 NC_002577.1 + 88925 0.66 0.898256
Target:  5'- aGCGGUGUauguuuGCc-CCGGGAggGGUCGu -3'
miRNA:   3'- gCGCCGCG------CGuuGGCCCUuaCUAGCc -5'
9714 5' -57 NC_002577.1 + 105960 0.66 0.898256
Target:  5'- aGCGGC-CGC-GCUGGGAA-GGcCGGc -3'
miRNA:   3'- gCGCCGcGCGuUGGCCCUUaCUaGCC- -5'
9714 5' -57 NC_002577.1 + 139540 0.66 0.898256
Target:  5'- gGCGuGCGCGCcgccGCCGGGcg----CGGg -3'
miRNA:   3'- gCGC-CGCGCGu---UGGCCCuuacuaGCC- -5'
9714 5' -57 NC_002577.1 + 125166 0.66 0.898256
Target:  5'- cCGCGGUGUGUguggggguGugUGGGggUGugugUGGg -3'
miRNA:   3'- -GCGCCGCGCG--------UugGCCCuuACua--GCC- -5'
9714 5' -57 NC_002577.1 + 140780 0.66 0.891847
Target:  5'- aGCGGCGUGCAggcGCCGGuGGGcuuacaGGg -3'
miRNA:   3'- gCGCCGCGCGU---UGGCC-CUUacuag-CC- -5'
9714 5' -57 NC_002577.1 + 156557 0.66 0.891847
Target:  5'- aGCGGCGUGCAggcGCCGGuGGGcuuacaGGg -3'
miRNA:   3'- gCGCCGCGCGU---UGGCC-CUUacuag-CC- -5'
9714 5' -57 NC_002577.1 + 122040 0.67 0.878386
Target:  5'- cCGCGGCGUcCGAuCCGGGAucgcucccGA-CGGg -3'
miRNA:   3'- -GCGCCGCGcGUU-GGCCCUua------CUaGCC- -5'
9714 5' -57 NC_002577.1 + 11574 0.67 0.878386
Target:  5'- cCGCGGCGUcCGAuCCGGGAucgcucccGA-CGGg -3'
miRNA:   3'- -GCGCCGCGcGUU-GGCCCUua------CUaGCC- -5'
9714 5' -57 NC_002577.1 + 65321 0.67 0.874184
Target:  5'- gGCGGCGCGUAcuggacuugcaaaacGCCGGGuuc-AUCa- -3'
miRNA:   3'- gCGCCGCGCGU---------------UGGCCCuuacUAGcc -5'
9714 5' -57 NC_002577.1 + 81262 0.67 0.871341
Target:  5'- cCGCGGgcgugGCGCAGCaCGGGGAccguuuagaUGGUCu- -3'
miRNA:   3'- -GCGCCg----CGCGUUG-GCCCUU---------ACUAGcc -5'
9714 5' -57 NC_002577.1 + 138245 0.67 0.856647
Target:  5'- gGCGGCGCaGCAGuuuCCGaGGAcgGUGAU-GGc -3'
miRNA:   3'- gCGCCGCG-CGUU---GGC-CCU--UACUAgCC- -5'
9714 5' -57 NC_002577.1 + 159093 0.67 0.856647
Target:  5'- gGCGGCGCaGCAGuuuCCGaGGAcgGUGAU-GGc -3'
miRNA:   3'- gCGCCGCG-CGUU---GGC-CCU--UACUAgCC- -5'
9714 5' -57 NC_002577.1 + 103138 0.67 0.854375
Target:  5'- aGCGGCGUGCAgaucguggugacgcGCCGu--AUGggCGGg -3'
miRNA:   3'- gCGCCGCGCGU--------------UGGCccuUACuaGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.