miRNA display CGI


Results 21 - 40 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9714 5' -57 NC_002577.1 + 134057 0.67 0.848233
Target:  5'- gGCGGCcuagcgagcgcccGCGCGGCCGGcGGgcAUGuccggCGGg -3'
miRNA:   3'- gCGCCG-------------CGCGUUGGCC-CU--UACua---GCC- -5'
9714 5' -57 NC_002577.1 + 163271 0.67 0.848233
Target:  5'- gGCGGCcuagcgagcgcccGCGCGGCCGGcGGgcAUGuccggCGGg -3'
miRNA:   3'- gCGCCG-------------CGCGUUGGCC-CU--UACua---GCC- -5'
9714 5' -57 NC_002577.1 + 139007 0.68 0.816652
Target:  5'- cCGCGGaaaGCGCGGgaGGGAgcgcgGUGG-CGGg -3'
miRNA:   3'- -GCGCCg--CGCGUUggCCCU-----UACUaGCC- -5'
9714 5' -57 NC_002577.1 + 106414 0.68 0.816652
Target:  5'- uCGcCGGgGCGUAuuACCGGGAAg---CGGc -3'
miRNA:   3'- -GC-GCCgCGCGU--UGGCCCUUacuaGCC- -5'
9714 5' -57 NC_002577.1 + 158330 0.68 0.816652
Target:  5'- cCGCGGaaaGCGCGGgaGGGAgcgcgGUGG-CGGg -3'
miRNA:   3'- -GCGCCg--CGCGUUggCCCU-----UACUaGCC- -5'
9714 5' -57 NC_002577.1 + 103709 0.68 0.808148
Target:  5'- gGgGGCGCGCcGCUaGGGGAgacuuucGUCGGg -3'
miRNA:   3'- gCgCCGCGCGuUGG-CCCUUac-----UAGCC- -5'
9714 5' -57 NC_002577.1 + 17577 0.68 0.808148
Target:  5'- aGUGGCGCGaAACgGGcGGAgguccGAUCGGc -3'
miRNA:   3'- gCGCCGCGCgUUGgCC-CUUa----CUAGCC- -5'
9714 5' -57 NC_002577.1 + 121918 0.69 0.781758
Target:  5'- uGCGGaGCGCGagagcggaGCCGGGGAcgGAggGGg -3'
miRNA:   3'- gCGCCgCGCGU--------UGGCCCUUa-CUagCC- -5'
9714 5' -57 NC_002577.1 + 3615 0.69 0.781758
Target:  5'- aGCcgGGCGCgaaGCGGCUGGGAucgGGUCGc -3'
miRNA:   3'- gCG--CCGCG---CGUUGGCCCUua-CUAGCc -5'
9714 5' -57 NC_002577.1 + 11696 0.69 0.781758
Target:  5'- uGCGGaGCGCGagagcggaGCCGGGGAcgGAggGGg -3'
miRNA:   3'- gCGCCgCGCGU--------UGGCCCUUa-CUagCC- -5'
9714 5' -57 NC_002577.1 + 136954 0.69 0.763516
Target:  5'- cCGCGGaGCGCGACCGGccc---UCGGa -3'
miRNA:   3'- -GCGCCgCGCGUUGGCCcuuacuAGCC- -5'
9714 5' -57 NC_002577.1 + 129998 0.69 0.763516
Target:  5'- aGCcgGGCGCgaaGCGGCUGGGAAUcgGGUCGc -3'
miRNA:   3'- gCG--CCGCG---CGUUGGCCCUUA--CUAGCc -5'
9714 5' -57 NC_002577.1 + 160383 0.69 0.763516
Target:  5'- cCGCGGaGCGCGACCGGccc---UCGGa -3'
miRNA:   3'- -GCGCCgCGCGUUGGCCcuuacuAGCC- -5'
9714 5' -57 NC_002577.1 + 107048 0.69 0.754224
Target:  5'- uCGuCGGaGCGCGACCGGGggUuuUUGa -3'
miRNA:   3'- -GC-GCCgCGCGUUGGCCCuuAcuAGCc -5'
9714 5' -57 NC_002577.1 + 19089 0.7 0.744831
Target:  5'- aGCGGCGagaaGCucacgAGCCGGGAGUG-UCu- -3'
miRNA:   3'- gCGCCGCg---CG-----UUGGCCCUUACuAGcc -5'
9714 5' -57 NC_002577.1 + 139363 0.7 0.735344
Target:  5'- gGCGGCGCGCAcGCCGGaAAgca-CGGc -3'
miRNA:   3'- gCGCCGCGCGU-UGGCCcUUacuaGCC- -5'
9714 5' -57 NC_002577.1 + 157975 0.7 0.735344
Target:  5'- gGCGGCGCGCAcGCCGGaAAgca-CGGc -3'
miRNA:   3'- gCGCCGCGCGU-UGGCCcUUacuaGCC- -5'
9714 5' -57 NC_002577.1 + 123998 0.7 0.716123
Target:  5'- cCGCGGUGCGUAccuGCaCGGGAuuccgGAUCc- -3'
miRNA:   3'- -GCGCCGCGCGU---UG-GCCCUua---CUAGcc -5'
9714 5' -57 NC_002577.1 + 9616 0.7 0.716123
Target:  5'- cCGCGGUGCGUAccuGCaCGGGAuuccgGAUCc- -3'
miRNA:   3'- -GCGCCGCGCGU---UG-GCCCUua---CUAGcc -5'
9714 5' -57 NC_002577.1 + 124532 0.73 0.557936
Target:  5'- gGCGaCGgGCGACCGGGAAUGcgUGc -3'
miRNA:   3'- gCGCcGCgCGUUGGCCCUUACuaGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.